4BWS
Crystal structure of the heterotrimer of PQBP1, U5-15kD and U5-52kD.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4bwsa_ | Alpha and beta proteins (a/b) | Thioredoxin fold | Thioredoxin-like | spliceosomal protein U5-15Kd | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d4bwsd_ | Alpha and beta proteins (a/b) | Thioredoxin fold | Thioredoxin-like | spliceosomal protein U5-15Kd | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d4bwsc1 | Alpha and beta proteins (a+b) | GYF/BRK domain-like | GYF domain | GYF domain | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d4bwsc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F | d4bwsf1 | Alpha and beta proteins (a+b) | GYF/BRK domain-like | GYF domain | GYF domain | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F | d4bwsf2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Thioredoxin-like | 8044390 | 3000031 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Thioredoxin-like | 8044390 | 3000031 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | GYF domain-like | 8032414 | 3001702 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | GYF domain-like | 8032414 | 3001702 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DIM1 | e4bwsA1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: DIM1 | ECOD (1.6) |
D | DIM1 | e4bwsD1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: DIM1 | ECOD (1.6) |
C | GYF | e4bwsC1 | A: a+b two layers | X: GYF/BRK domain-like | H: GYF domain (From Topology) | T: GYF domain | F: GYF | ECOD (1.6) |
F | GYF | e4bwsF1 | A: a+b two layers | X: GYF/BRK domain-like | H: GYF domain (From Topology) | T: GYF domain | F: GYF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
D | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
C | 3.30.1490.40 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
F | 3.30.1490.40 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02213 | GYF domain (GYF) | GYF domain | The GYF domain is named because of the presence of Gly-Tyr-Phe residues. The GYF domain is a proline-binding domain in CD2-binding protein Swiss:O95400. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004123 | Dim1 family | Family | |
IPR036249 | Thioredoxin-like superfamily | Homologous Superfamily | |
IPR036020 | WW domain superfamily | Homologous Superfamily | |
IPR001202 | WW domain | Domain | |
IPR003169 | GYF domain | Domain | |
IPR035445 | GYF-like domain superfamily | Homologous Superfamily | |
IPR039905 | CD2 antigen cytoplasmic tail-binding protein 2/Lin1 | Family |