4BK4
crystal structure of the human EphA4 ectodomain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ephrin_lbd | e4bk4A1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Ephrin_lbd | ECOD (1.6) |
A | fn3 | e4bk4A5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3 | ECOD (1.6) |
A | fn3_9 | e4bk4A4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3_9 | ECOD (1.6) |
A | TNFR_c6 | e4bk4A3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: TNFR_c6 | ECOD (1.6) |
A | KOG0196 | e4bk4A2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: Complement control module/SCR domain | F: KOG0196 | ECOD (1.6) |
B | Ephrin_lbd | e4bk4B1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Ephrin_lbd | ECOD (1.6) |
B | KOG0196 | e4bk4B2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: KOG0196 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
A | 2.60.40.1770 | Mainly Beta | Sandwich | Immunoglobulin-like | ephrin a2 ectodomain | CATH (4.3.0) |
A | 2.10.50.10 | Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A | domain 2 | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
B | 2.60.40.1770 | Mainly Beta | Sandwich | Immunoglobulin-like | ephrin a2 ectodomain | CATH (4.3.0) |
B | 2.10.50.10 | Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01404 | Ephrin receptor ligand binding domain (Ephrin_lbd) | Ephrin receptor ligand binding domain | The Eph receptors, which bind to ephrins Pfam:PF00812 are a large family of receptor tyrosine kinases. This family represents the amino terminal domain which binds the ephrin ligand [1]. | Domain | |
PF00041 | Fibronectin type III domain (fn3) | Fibronectin type III domain | - | Domain | |
PF07699 | Tyrosine-protein kinase ephrin type A/B receptor-like (Ephrin_rec_like) | Tyrosine-protein kinase ephrin type A/B receptor-like | This family has repeats of a region rich in cysteines. It is found in various ephrin type A and B receptors, which have tyrosine kinase activity. | Domain |