4AKM

Crystal structure of the human lysosome-associated membrane protein LAMP-3 (aka DC-LAMP)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4akma_	All beta proteins	Pseudo beta-prism II	LAMP conserved domain-like	LAMP conserved domain	DC-LAMP	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4akmb_	All beta proteins	Pseudo beta-prism II	LAMP conserved domain-like	LAMP conserved domain	DC-LAMP	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01299	e4akmA1	A: beta meanders	X: lysosome-associated membrane protein LAMP-3 (From Topology)	H: lysosome-associated membrane protein LAMP-3 (From Topology)	T: lysosome-associated membrane protein LAMP-3	F: PF01299	ECOD (1.6)
B	PF01299	e4akmB1	A: beta meanders	X: lysosome-associated membrane protein LAMP-3 (From Topology)	H: lysosome-associated membrane protein LAMP-3 (From Topology)	T: lysosome-associated membrane protein LAMP-3	F: PF01299	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.160.110	Mainly Beta	Beta Barrel	Porin		CATH (4.3.0)
B	2.40.160.110	Mainly Beta	Beta Barrel	Porin		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01299	Lysosome-associated membrane glycoprotein 2-like, luminal domains (Lamp2-like_luminal)	Lysosome-associated membrane glycoprotein 2-like, luminal domains	This domain is found in a group of animal proteins that includes Lysosome-associated membrane glycoprotein 2 from humans (Lamp2). Lamp2 is an integral membrane protein that plays an important role in chaperone-mediated autophagy (CMA), targeting pert ...	This domain is found in a group of animal proteins that includes Lysosome-associated membrane glycoprotein 2 from humans (Lamp2). Lamp2 is an integral membrane protein that plays an important role in chaperone-mediated autophagy (CMA), targeting pertinent proteins for lysosomal degradation. This protein is organised into two conserved luminal domains (this entry), a single transmembrane (TM) domain (Pfam:PF21222), and a short C-terminal cytosolic tail. It adopts a trimeric configuration [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 3	-	negative regulation of hydrolase activity regulation of cellular process negative regulation of proteolysis regulation of catalytic activity negative regulation of biological process negative regulation of catalytic activity regulation of programmed cell death negative regulation of endopeptidase activity regulation of primary metabolic process negative regulation of peptidase activity regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of proteolysis proteolysis regulation of endopeptidase activity negative regulation of cellular process negative regulation of hydrolase activity regulation of cellular process negative regulation of proteolysis regulation of catalytic activity negative regulation of biological process negative regulation of catalytic activity regulation of programmed cell death negative regulation of endopeptidase activity regulation of primary metabolic process negative regulation of peptidase activity regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of proteolysis proteolysis regulation of endopeptidase activity negative regulation of cellular process negative regulation of cysteine-type endopeptidase activity involved in apoptotic process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of cysteine-type endopeptidase activity regulation of biological process organonitrogen compound metabolic process negative regulation of programmed cell death regulation of protein metabolic process regulation of apoptotic process negative regulation of metabolic process regulation of peptidase activity biological regulation negative regulation of molecular function primary metabolic process regulation of macromolecule metabolic process cell death regulation of molecular function negative regulation of apoptotic process regulation of hydrolase activity negative regulation of cysteine-type endopeptidase activity metabolic process cellular process macromolecule metabolic process apoptotic process regulation of metabolic process programmed cell death response to stimulus immune response immune system process adaptive immune response catabolic process negative regulation of proteolysis involved in protein catabolic process proteolysis involved in protein catabolic process macromolecule catabolic process negative regulation of protein catabolic process regulation of proteolysis involved in protein catabolic process organonitrogen compound catabolic process negative regulation of catabolic process proteasomal protein catabolic process protein catabolic process regulation of catabolic process negative regulation of proteasomal protein catabolic process regulation of proteasomal protein catabolic process regulation of protein catabolic process cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process cellular metabolic process regulation of cellular metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of cellular biosynthetic process regulation of viral life cycle regulation of viral process viral process viral life cycle protein localization localization establishment of protein localization cellular localization establishment of protein localization to organelle cellular macromolecule localization macromolecule localization protein localization to organelle establishment of localization response to peptide response to interferon-alpha response to chemical response to cytokine autophagy regulation of autophagy cellular catabolic process regulation of cellular catabolic process process utilizing autophagic mechanism	membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle vacuolar membrane membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle vacuolar membrane membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome endosome membrane early endosome membrane cytoplasmic vesicle membrane vesicle membrane cell surface perinuclear region of cytoplasm cell periphery plasma membrane late endosome membrane late endosome alveolar lamellar body membrane lamellar body lamellar body membrane secretory granule secretory vesicle secretory granule membrane alveolar lamellar body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002000	Lysosome-associated membrane glycoprotein	Family
A, B	IPR048528	Lysosome-associated membrane glycoprotein 2-like, luminal domains	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9UQV4	influenza multiple sclerosis ovarian cancer plasma cell myeloma spina bifida acute myeloid leukemia atypical teratoid rhabdoid tumor Crohn disease diabetes mellitus lung adenocarcinoma malignant glioma non-small cell lung carcinoma pancreatic ductal adenocarcinoma psoriasis tuberculosis influenza multiple sclerosis ovarian cancer plasma cell myeloma spina bifida acute myeloid leukemia atypical teratoid rhabdoid tumor Crohn disease diabetes mellitus lung adenocarcinoma malignant glioma non-small cell lung carcinoma pancreatic ductal adenocarcinoma psoriasis tuberculosis adrenal cortex carcinoma breast cancer cutaneous lupus erythematosus ductal breast carcinoma in situ interstitial cystitis lung cancer malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Sjogren syndrome ulcerative colitis atopic eczema breast carcinoma cystic fibrosis glioblastoma invasive ductal breast carcinoma lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.