3N41
Crystal structure of the mature envelope glycoprotein complex (spontaneous cleavage) of Chikungunya virus.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth F] | d3n41f2 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | CHIKV (Chikungunya virus ) [TaxId: 37124 ], | SCOPe (2.08) |
C [auth F] | d3n41f1 | Membrane and cell surface proteins and peptides | Viral glycoprotein, central and dimerisation domains | Viral glycoprotein, central and dimerisation domains | Viral glycoprotein, central and dimerisation domains | automated matches | CHIKV (Chikungunya virus ) [TaxId: 37124 ], | SCOPe (2.08) |
C [auth F] | d3n41f3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | CHIKV (Chikungunya virus ) [TaxId: 37124 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Alpha_E3_glycop | e3n41A2 | A: a+b two layers | X: Glycoprotein E3 (From Topology) | H: Glycoprotein E3 (From Topology) | T: Glycoprotein E3 | F: Alpha_E3_glycop | ECOD (1.6) |
B | Alpha_E2_glycop_2nd | e3n41B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_2nd | ECOD (1.6) |
B | Alpha_E2_glycop_1st | e3n41B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_1st | ECOD (1.6) |
B | Alpha_E2_glycop_3rd | e3n41B3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_3rd | ECOD (1.6) |
C [auth F] | Alpha_E1_glycop_2nd | e3n41F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
C [auth F] | Alpha_E1_glycop_1st | e3n41F2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.287.2230 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
B | 2.60.40.3200 | Mainly Beta | Sandwich | Immunoglobulin-like | Alphavirus E2 glycoprotein, A domain | CATH (4.3.0) |
B | 2.60.40.4310 | Mainly Beta | Sandwich | Immunoglobulin-like | Alphavirus E2 glycoprotein, domain B | CATH (4.3.0) |
B | 2.60.40.2400 | Mainly Beta | Sandwich | Immunoglobulin-like | Alphavirus E2 glycoprotein, domain C | CATH (4.3.0) |
C [auth F] | 2.60.98.10 | Mainly Beta | Sandwich | Tick-borne Encephalitis virus Glycoprotein | domain 1 | CATH (4.3.0) |
C [auth F] | 2.60.40.350 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01563 | Alphavirus E3 glycoprotein (Alpha_E3_glycop) | Alphavirus E3 glycoprotein | - | Family | |
PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Bitopic proteins | Viral membrane fusion glycoprotein | Alphavirus E1 glycoprotein |