3L7Z
Crystal structure of the S. solfataricus archaeal exosome
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034677 | 3000100 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8034679 | 3000346 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034677 | 3000100 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8034679 | 3000346 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034677 | 3000100 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8034679 | 3000346 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nucleic acid-binding proteins | 8034682 | 3000135 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8034684 | 3001023 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribosomal L27 protein-like | 8034683 | 3000539 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribosomal L27 protein-like | 8034683 | 3000539 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Nucleic acid-binding proteins | 8034682 | 3000135 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8034684 | 3001023 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Ribosomal L27 protein-like | 8034683 | 3000539 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Nucleic acid-binding proteins | 8034682 | 3000135 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8034684 | 3001023 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034673 | 3000100 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8034675 | 3000346 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034673 | 3000100 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8034675 | 3000346 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8034675 | 3000346 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034673 | 3000100 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | RNase_PH | e3l7zB2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
B | RNase_PH_C_3 | e3l7zB1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
E | RNase_PH | e3l7zE2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
E | RNase_PH_C_3 | e3l7zE1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
H | RNase_PH | e3l7zH2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
H | RNase_PH_C_3 | e3l7zH1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
C | S1_5 | e3l7zC4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
C | KH_6_2 | e3l7zC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_2 | ECOD (1.6) |
C | ECR1_N_2 | e3l7zC5 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_2 | ECOD (1.6) |
F | S1_5 | e3l7zF1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
F | KH_6_2 | e3l7zF5 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_2 | ECOD (1.6) |
F | ECR1_N_2 | e3l7zF4 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_2 | ECOD (1.6) |
I | S1_5 | e3l7zI1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
I | KH_6_2 | e3l7zI2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_2 | ECOD (1.6) |
I | ECR1_N_2 | e3l7zI3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_2 | ECOD (1.6) |
A | RNase_PH_2 | e3l7zA3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
A | RNase_PH_C_1 | e3l7zA4 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
D | RNase_PH_2 | e3l7zD3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
D | RNase_PH_C_1 | e3l7zD4 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
G | RNase_PH_2 | e3l7zG3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
G | RNase_PH_C_1 | e3l7zG4 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
PF22625 | Exosome RNA binding protein RRP4 N-terminal domain (ECR1_N_2) | Exosome RNA binding protein RRP4 N-terminal domain | This domain is found N-terminal in exosome RNA binding protein RRP4 and related proteins [1-5]. RRP4 is a part of the exosome regulatory substrate recognition platform. This domain is structurally similar to ribosomal L27 protein. | Domain | |
PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |