3E20
Crystal structure of S.pombe eRF1/eRF3 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056490 | 3002024 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056489 | 3002024 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056490 | 3002024 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056489 | 3002024 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056489 | 3002024 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056490 | 3002024 | SCOP2B (2022-06-29) |
G [auth J] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056490 | 3002024 | SCOP2B (2022-06-29) |
G [auth J] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056489 | 3002024 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GTP_EFTU_D2_1 | e3e20A2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_1 | ECOD (1.6) |
A | GTP_EFTU_D3_1 | e3e20A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: GTP_EFTU_D3_1 | ECOD (1.6) |
C [auth D] | GTP_EFTU_D2_1 | e3e20D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_1 | ECOD (1.6) |
C [auth D] | GTP_EFTU_D3_1 | e3e20D2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: GTP_EFTU_D3_1 | ECOD (1.6) |
E | GTP_EFTU_D2_1 | e3e20E1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_1 | ECOD (1.6) |
E | GTP_EFTU_D3_1 | e3e20E2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: GTP_EFTU_D3_1 | ECOD (1.6) |
G [auth J] | GTP_EFTU_D2_1 | e3e20J1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_1 | ECOD (1.6) |
G [auth J] | GTP_EFTU_D3_1 | e3e20J2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: GTP_EFTU_D3_1 | ECOD (1.6) |
B [auth C] | eRF1_3 | e3e20C2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: eRF1_3 | ECOD (1.6) |
B [auth C] | eRF1_1_1 | e3e20C1 | A: a+b three layers | X: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology) | H: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology) | T: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | F: eRF1_1_1 | ECOD (1.6) |
D [auth B] | eRF1_3 | e3e20B3 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: eRF1_3 | ECOD (1.6) |
D [auth B] | eRF1_1_1 | e3e20B1 | A: a+b three layers | X: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology) | H: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology) | T: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | F: eRF1_1_1 | ECOD (1.6) |
F [auth H] | eRF1_3 | e3e20H1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: eRF1_3 | ECOD (1.6) |
F [auth H] | eRF1_1_1 | e3e20H2 | A: a+b three layers | X: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology) | H: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology) | T: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | F: eRF1_1_1 | ECOD (1.6) |
H [auth K] | eRF1_3 | e3e20K2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: eRF1_3 | ECOD (1.6) |
H [auth K] | eRF1_1_1 | e3e20K1 | A: a+b three layers | X: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology) | H: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology) | T: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | F: eRF1_1_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth D], E, G [auth J] | PF03143 | Elongation factor Tu C-terminal domain (GTP_EFTU_D3) | Elongation factor Tu C-terminal domain | Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2]. | Domain |
B [auth C], D [auth B], F [auth H], H [auth K] | PF03465 | eRF1 domain 3 (eRF1_3) | eRF1 domain 3 | The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ... | Domain |
B [auth C], D [auth B], F [auth H], H [auth K] | PF03463 | eRF1 domain 1 (eRF1_1) | eRF1 domain 1 | The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ... | Domain |