3ZDM
Crystal structure of the Sgt2 N domain and the Get5 UBL domain complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F | d3zdmf_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | automated matches | automated matches | BAKER'S YEAST (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
C | d3zdmc_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | automated matches | automated matches | BAKER'S YEAST (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F | SCOP2B Superfamily | Ubiquitin-like | 8082060 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ubiquitin-like | 8082060 | 3000157 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | SGTA homodimerisation domain-like | 8091928 | 3002547 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | SGTA homodimerisation domain-like | 8091928 | 3002547 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | SGTA homodimerisation domain-like | 8091928 | 3002547 | SCOP2B (2022-06-29) |
E | SCOP2 Family | SGTA homodimerisation domain-like | 8045754 | 4004661 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | SGTA homodimerisation domain-like | 8091928 | 3002547 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F | ubiquitin_2 | e3zdmF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
C | ubiquitin_2 | e3zdmC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
A | SGTA_dimer | e3zdmA1 | A: alpha arrays | X: Dimerization domain of Sgt2 (From Topology) | H: Dimerization domain of Sgt2 (From Topology) | T: Dimerization domain of Sgt2 | F: SGTA_dimer | ECOD (1.6) |
B | SGTA_dimer | e3zdmB1 | A: alpha arrays | X: Dimerization domain of Sgt2 (From Topology) | H: Dimerization domain of Sgt2 (From Topology) | T: Dimerization domain of Sgt2 | F: SGTA_dimer | ECOD (1.6) |
D | SGTA_dimer | e3zdmD1 | A: alpha arrays | X: Dimerization domain of Sgt2 (From Topology) | H: Dimerization domain of Sgt2 (From Topology) | T: Dimerization domain of Sgt2 | F: SGTA_dimer | ECOD (1.6) |
E | SGTA_dimer | e3zdmE1 | A: alpha arrays | X: Dimerization domain of Sgt2 (From Topology) | H: Dimerization domain of Sgt2 (From Topology) | T: Dimerization domain of Sgt2 | F: SGTA_dimer | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
F | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
A | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
B | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
D | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
E | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16546 | Homodimerisation domain of SGTA (SGTA_dimer) | Homodimerisation domain of SGTA | SGTA_dimer is a short N-terminal domain at the start of SGTA or small glutamine-rich tetratricopeptide repeat-containing proteins. It is the homodimerisation domain of the SGTA, a heat-shock protein (HSP) co-chaperone involved in the targeting of ta ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR031765 | Mdy2, Get4 binding domain | Domain | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR040474 | Ubiquitin-like protein MDY2, C-terminal domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR047150 | SGT | Family | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR019734 | Tetratricopeptide repeat | Repeat | |
IPR032374 | SGTA, homodimerisation domain | Domain |