Annotations: 3ZBI

Fitting result in the O-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cytochrom_C	e3zbiA1	A: beta barrels	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: Cytochrom_C	ECOD (v294.2)
BA [auth b]	NTP_transferase	e3zbib2	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: NTP_transferase	ECOD (v294.2)
D	V-set	e3zbiD1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
EA [auth e]	NTP_transferase	e3zbie2	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: NTP_transferase	ECOD (v294.2)
G	NTP_transferase	e3zbiG2	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: NTP_transferase	ECOD (v294.2)
HA [auth h]	V-set	e3zbih1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
J	NTP_transferase	e3zbiJ2	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: NTP_transferase	ECOD (v294.2)
KA [auth k]	V-set	e3zbik1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
NA [auth n]	V-set	e3zbin1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
P	V-set	e3zbiP1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
S	V-set	e3zbiS1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
V	V-set	e3zbiV1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
Y	V-set	e3zbiY1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
M	V-set	e3zbiM1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
B		e3zbiB1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F:	ECOD (v294.2)
CA [auth c]	V-set	e3zbic1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
E	V-set	e3zbiE1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
FA [auth f]	V-set	e3zbif1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
H	V-set	e3zbiH1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
IA [auth i]	V-set	e3zbii1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
LA [auth l]	V-set	e3zbil1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
N	V-set	e3zbiN1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
OA [auth o]	V-set	e3zbio1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
Q	V-set	e3zbiQ1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
T	V-set	e3zbiT1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
W	V-set	e3zbiW1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
Z	V-set	e3zbiZ1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
K	V-set	e3zbiK1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.2)
AA [auth a]	peroxidase	e3zbia1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
C		e3zbiC1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F:	ECOD (v294.2)
DA [auth d]	peroxidase	e3zbid1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
F	peroxidase	e3zbiF1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
GA [auth g]	peroxidase	e3zbig1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
I	peroxidase	e3zbiI1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
JA [auth j]	peroxidase	e3zbij1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
L	peroxidase	e3zbiL1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
MA [auth m]	peroxidase	e3zbim1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
O	peroxidase	e3zbiO1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
PA [auth p]	peroxidase	e3zbip1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
R	peroxidase	e3zbiR1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
U	peroxidase	e3zbiU1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)
X	peroxidase	e3zbiX1	A: beta barrels	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: peroxidase	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	TRAF PROTEIN	-	-	cell periphery cellular anatomical structure plasma membrane membrane
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	TRAO PROTEIN	-	-	-
AA [auth a], C, DA [auth d], F, GA [auth g], AA [auth a], C, DA [auth d], F, GA [auth g], I, JA [auth j], L, MA [auth m], O, PA [auth p], R, U, X	TRAN PROTEIN	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	IPR047695	Type IV secretion system, VirB10/PtlG	Family
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	IPR010258	Conjugal transfer TrbG/VirB9/CagX	Family
AA [auth a], C, DA [auth d], F, GA [auth g], AA [auth a], C, DA [auth d], F, GA [auth g], I, JA [auth j], L, MA [auth m], O, PA [auth p], R, U, X	IPR049533	TraN-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3ZBI | pdb_00003zbi

Fitting result in the O-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage