Crystal structure of Type Six Secretion System protein


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BGTP-eEF1A_Ce3wx6B1 A: beta barrelsX: OB-foldH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: GTP-eEF1A_CECOD (v294.2)
AGTP-eEF1A_Ce3wx6A1 A: beta barrelsX: OB-foldH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: GTP-eEF1A_CECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF05638Type VI secretion system effector, Hcp (T6SS_HCP)Type VI secretion system effector, HcpHCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head [1] bein ...HCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head [1] being part of the type VI secretion system [3,4]. Initially Hcp forms a hexameric structure with a central channel of 40 Angstroms. These hexamers pile up one on top of each other forming nanotubes resembling the gp19 tail phage tube [2].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036624Hcp1-like superfamilyHomologous Superfamily
A, B
IPR008514Type VI secretion system effector HcpDomain