3VUY
Crystal structure of A20 ZF7 in complex with linear tetraubiquitin
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3vuya_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d3vuyc_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E [auth B] | d3vuyb_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ubiquitin_1 | e3vuyA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
C | ubiquitin_1 | e3vuyC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
E [auth B] | ubiquitin_1 | e3vuyB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
B [auth D] | zf-A20 | e3vuyD1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
D [auth F] | zf-A20 | e3vuyF1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
F [auth E] | zf-A20 | e3vuyE1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
E [auth B] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C, E [auth B] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
B [auth D], D [auth F], F [auth E] | PF01754 | A20-like zinc finger (zf-A20) | A20-like zinc finger | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C, E [auth B] | IPR019954 | Ubiquitin conserved site | Conserved Site |
A, C, E [auth B] | IPR000626 | Ubiquitin-like domain | Domain |
A, C, E [auth B] | IPR019956 | Ubiquitin domain | Domain |
A, C, E [auth B] | IPR050158 | Ubiquitin and ubiquitin-like | Family |
A, C, E [auth B] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
B [auth D], D [auth F], F [auth E] | IPR003323 | OTU domain | Domain |
B [auth D], D [auth F], F [auth E] | IPR002653 | Zinc finger, A20-type | Domain |
B [auth D], D [auth F], F [auth E] | IPR051346 | OTU Domain-Containing Deubiquitinase | Family |