Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyAcylphosphatase-like 8004421 4000382 SCOP2 (2022-06-29)
ASCOP2 FamilyYgjD/Kae1-like 8004424 4000383 SCOP2 (2022-06-29)
ASCOP2 FamilyYrdC/Sua5-like 8004430 4000384 SCOP2 (2022-06-29)
ASCOP2 FamilyHypF zinc finger 8004433 4000385 SCOP2 (2022-06-29)
ASCOP2 FamilyHypF zinc finger 8004434 4000385 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyAcylphosphatase/BLUF domain-like 8004422 3000165 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyActin-like ATPases 8092407 3000092 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYrdC/RibB-like 8004431 3000166 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHypF zinc finger 8019805 3002027 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHypF zinc finger 8019806 3002027 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyActin-like ATPases 8004425 3000092 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyActin-like ATPases 8092407 3000092 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyYrdC/RibB-like 8004431 3000166 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyActin-like ATPases 8004425 3000092 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHypF zinc finger 8019805 3002027 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAcylphosphatasee3vthA9 A: a+b two layersX: Alpha-beta plaitsH: Acylphosphatase-like (From Topology)T: Acylphosphatase-likeF: AcylphosphataseECOD (1.6)
ASua5_yciO_yrdCe3vthA7 A: a+b complex topologyX: YrdC/RibB (From Topology)H: YrdC/RibB (From Topology)T: YrdC/RibBF: Sua5_yciO_yrdCECOD (1.6)
APeptidase_M22_C_1e3vthA8 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Peptidase_M22_C_1ECOD (1.6)
AHypF_1e3vthA10 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: HypF_1ECOD (1.6)
Azf-HYPFe3vthA5 A: few secondary structure elementsX: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)T: Zinc finger domain in hydrogenase maturation protein HypFF: zf-HYPFECOD (1.6)
BSua5_yciO_yrdCe3vthB3 A: a+b complex topologyX: YrdC/RibB (From Topology)H: YrdC/RibB (From Topology)T: YrdC/RibBF: Sua5_yciO_yrdCECOD (1.6)
BPeptidase_M22_C_1e3vthB4 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Peptidase_M22_C_1ECOD (1.6)
BHypF_1e3vthB5 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: HypF_1ECOD (1.6)
Bzf-HYPFe3vthB2 A: few secondary structure elementsX: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)T: Zinc finger domain in hydrogenase maturation protein HypFF: zf-HYPFECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.870.50 Alpha Beta Alpha-Beta Complex DHBP synthase CATH (4.3.0)
A3.30.110.120 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 CATH (4.3.0)
A3.30.420.360 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
A3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
B3.90.870.30 Alpha Beta Alpha-Beta Complex DHBP synthase CATH (4.3.0)
B3.30.110.120 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 CATH (4.3.0)
B3.30.420.360 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
B3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF22521Carbamoyltransferase, Kae1-like Domain, second subdomain (HypF_C_2)Carbamoyltransferase, Kae1-like Domain, second subdomainThis domain is found at the C-terminal end of Carbamoyltransferase from Caldanaerobacter subterraneus (HypF, Swiss:Q8RDB0) and similar prokaryotic sequences. HypF is involved in the biosynthesis of the nitrile group as a precursor of the cyano groups ...This domain is found at the C-terminal end of Carbamoyltransferase from Caldanaerobacter subterraneus (HypF, Swiss:Q8RDB0) and similar prokaryotic sequences. HypF is involved in the biosynthesis of the nitrile group as a precursor of the cyano groups of hydrogenases. HypF consists of four domains: the acylphosphatase domain (Pfam:PF00708), the Zn finger-like domain (Pfam:PF07503), the YrdC-like domain (Pfam:PF01300) and the Kae1 (kinase-associated endopeptidase 1)-like domain, which is composed of two alpha-beta subdomains (Pfam:PF17788 and this entry) [5].
Domain
A, B
PF07503HypF finger (zf-HYPF)HypF fingerThe HypF family of proteins are involved in the maturation and regulation of hydrogenase ([1]). In the N-terminus they appear to have two Zinc finger domains, as modelled by this family.Domain
A, B
PF00708Acylphosphatase (Acylphosphatase)Acylphosphatase- Domain
A, B
PF17788HypF Kae1-like domain (HypF_C)HypF Kae1-like domainThis domain is found in the HypF protein. In the structure it is one of the two subdomains of the Kae1 domain [1].Domain
A, B
PF01300Telomere recombination (Sua5_yciO_yrdC)Telomere recombination- Family