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Crystal structure of BMJ4 p24 capsid protein in complex with A10F9 Fab External Resource: Annotation Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) F [auth D] SCOP2B Superfamily Retrovirus capsid dimerization domain-like 8077066 3001819 SCOP2B (2022-06-29) C SCOP2 Family Retrovirus capsid protein C-terminal domain 8077065 4000865 SCOP2 (2022-06-29) C SCOP2 Superfamily Retrovirus capsid dimerization domain-like 8077066 3001819 SCOP2 (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) F [auth D] SIS e3vrlD1 A: alpha arrays X: Ribosomal protein L31e-like H: Reductive activator for corrinoid/iron-sulfur protein second domain T: Reductive activator for corrinoid/iron-sulfur protein second domain F: SIS ECOD (v295.2) C e3vrlC1 A: alpha arrays X: Rossmann-like H: Rossmann-related T: NagB/RpiA/CoA transferase-like F: ECOD (v295.2) E [auth F] V-set e3vrlF1 A: alpha arrays X: beta-Grasp H: Ubiquitin-related T: Ubiquitin-like F: V-set ECOD (v295.2) B [auth L] e3vrlL1 A: alpha arrays X: Rossmann-like H: Rossmann-related T: NagB/RpiA/CoA transferase-like F: ECOD (v295.2) D [auth E] ABC_tran e3vrlE1 A: alpha arrays X: beta-Grasp H: Ubiquitin-related T: Ubiquitin-like F: ABC_tran ECOD (v295.2) A [auth H] e3vrlH1 A: alpha arrays X: Rossmann-like H: Rossmann-related T: NagB/RpiA/CoA transferase-like F: ECOD (v295.2) A [auth H] Rhv e3vrlH2 A: alpha arrays X: HTH H: HTH T: Catalytic domain of hepatitis C virus NS2-3 protease F: Rhv ECOD (v295.2)
Chain Protein Name Description Organism Name Gene Allele Name(s) Domain Name(s) Receptor Type Receptor Description Provenance Source B [auth L] ,E [auth F] A10F9 Fab L-KAPPA Mus musculus (house mouse) IGKV12-41*02, IGKV12-41*01, IGKJ1*01, IGKJ1*02, IGKJ2*01, IGKC*01, IGKC*02 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202637-0) A [auth H] ,D [auth E] A10F9 Fab VH-CH1 Mus musculus (house mouse) IGHV5-6-4*01, IGHJ4*01, IGHG1*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202637-0)
Chains Accession Name Type C ,F [auth D] IPR000071 Immunodeficiency lentiviral matrix, N-terminal Domain C ,F [auth D] IPR045345 Retroviral nucleocapsid Gag protein p24, C-terminal domain Domain C ,F [auth D] IPR036875 Zinc finger, CCHC-type superfamily Homologous Superfamily C ,F [auth D] IPR050195 Primate lentivirus group Gag polyprotein-like Domain C ,F [auth D] IPR001878 Zinc finger, CCHC-type Domain C ,F [auth D] IPR008919 Retrovirus capsid, N-terminal Homologous Superfamily C ,F [auth D] IPR010999 Retroviral matrix protein Homologous Superfamily C ,F [auth D] IPR012344 Matrix protein, lentiviral and alpha-retroviral, N-terminal Homologous Superfamily C ,F [auth D] IPR014817 Gag protein p6 Domain C ,F [auth D] IPR008916 Retrovirus capsid, C-terminal Homologous Superfamily B [auth L] ,E [auth F] IPR003597 Immunoglobulin C1-set Domain B [auth L] ,E [auth F] IPR050150 Immunoglobulin Variable Light Chain Family B [auth L] ,E [auth F] IPR013783 Immunoglobulin-like fold Homologous Superfamily B [auth L] ,E [auth F] IPR036179 Immunoglobulin-like domain superfamily Homologous Superfamily B [auth L] ,E [auth F] IPR013106 Immunoglobulin V-set domain Domain B [auth L] ,E [auth F] IPR003599 Immunoglobulin domain subtype Domain B [auth L] ,E [auth F] IPR007110 Immunoglobulin-like domain Domain B [auth L] ,E [auth F] IPR003006 Immunoglobulin/major histocompatibility complex, conserved site Conserved Site A [auth H] ,D [auth E] IPR003597 Immunoglobulin C1-set Domain A [auth H] ,D [auth E] IPR050199 Immunoglobulin Heavy Variable Family A [auth H] ,D [auth E] IPR013783 Immunoglobulin-like fold Homologous Superfamily A [auth H] ,D [auth E] IPR036179 Immunoglobulin-like domain superfamily Homologous Superfamily A [auth H] ,D [auth E] IPR013106 Immunoglobulin V-set domain Domain A [auth H] ,D [auth E] IPR003599 Immunoglobulin domain subtype Domain A [auth H] ,D [auth E] IPR007110 Immunoglobulin-like domain Domain