crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa in complex with immune protein Tsi1
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H | PI3K_C2 | e3vpjH2 | A: alpha arrays | X: HTH | H: HTH | T: winged helix domain | F: PI3K_C2 | ECOD (v295.2) |
| G | PI3K_C2 | e3vpjG2 | A: alpha arrays | X: HTH | H: HTH | T: winged helix domain | F: PI3K_C2 | ECOD (v295.2) |
| D [auth F] | PI3K_C2 | e3vpjF2 | A: alpha arrays | X: HTH | H: HTH | T: winged helix domain | F: PI3K_C2 | ECOD (v295.2) |
| C [auth E] | HSP90,HATPase_c_3 | e3vpjE1 | A: alpha arrays | X: Flavodoxin-like | H: SH3 | T: SH3 | F: HSP90,HATPase_c_3 | ECOD (v295.2) |
| F [auth D] | AMA-1 | e3vpjD2 | A: alpha arrays | X: Fusion glycoprotein F2 | H: Fusion glycoprotein F2 | T: Fusion glycoprotein F2 | F: AMA-1 | ECOD (v295.2) |
| E [auth C] | AMA-1 | e3vpjC2 | A: alpha arrays | X: Fusion glycoprotein F2 | H: Fusion glycoprotein F2 | T: Fusion glycoprotein F2 | F: AMA-1 | ECOD (v295.2) |
| B | AMA-1 | e3vpjB2 | A: alpha arrays | X: Fusion glycoprotein F2 | H: Fusion glycoprotein F2 | T: Fusion glycoprotein F2 | F: AMA-1 | ECOD (v295.2) |
| A | AMA-1 | e3vpjA2 | A: alpha arrays | X: Fusion glycoprotein F2 | H: Fusion glycoprotein F2 | T: Fusion glycoprotein F2 | F: AMA-1 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| H | 2.40.128.650 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
| G | 2.40.128.650 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
| D [auth F] | 2.40.128.650 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
| C [auth E] | 2.40.128.650 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
| F [auth D] | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
| E [auth C] | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
| B | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
| A | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth E], D [auth F], G, H | PF21565 | Immune protein Tsi1 (Tsi1) | Immune protein Tsi1 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| C [auth E], D [auth F], G, H | Tse1-specific immunity protein | - | - | - |
| A, B, E [auth C], F [auth D] | type VI secretion exported 1 | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth E], D [auth F], G, H | IPR049346 | Immune protein Tsi1-like superfamily | Homologous Superfamily |
| C [auth E], D [auth F], G, H | IPR049345 | Immune protein Tsi1 | Family |
| A, B, E [auth C], F [auth D] | IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily |