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 3VB9 | pdb_00003vb9

Crystal structure of VPA0735 from Vibrio parahaemolyticus in monoclinic form, NorthEast Structural Genomics target VpR109

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd3vb9d_ Multi-domain proteins (alpha and beta) VPA0735-like VPA0735-like VPA0735-like Hypothetical protein VPA0735 (Vibrio parahaemolyticus ) [TaxId: 670 ], SCOPe (2.08)
Cd3vb9c_ Multi-domain proteins (alpha and beta) VPA0735-like VPA0735-like VPA0735-like Hypothetical protein VPA0735 (Vibrio parahaemolyticus ) [TaxId: 670 ], SCOPe (2.08)
Bd3vb9b_ Multi-domain proteins (alpha and beta) VPA0735-like VPA0735-like VPA0735-like Hypothetical protein VPA0735 (Vibrio parahaemolyticus ) [TaxId: 670 ], SCOPe (2.08)
Ad3vb9a_ Multi-domain proteins (alpha and beta) VPA0735-like VPA0735-like VPA0735-like Hypothetical protein VPA0735 (Vibrio parahaemolyticus ) [TaxId: 670 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyVPA0735 beta-sandwich domain-like 8035342 3001579 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyVPA0735 beta-sandwich domain-like 8054389 3001579 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyVPA0735 beta-sandwich domain-like 8054389 3001579 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyVPA0735 beta-sandwich domain-like 8035342 3001579 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyVPA0735 beta-sandwich domain-like 8054389 3001579 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyVPA0735 beta-sandwich domain-like 8035342 3001579 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyVPA0735 beta-sandwich domain-like 8035342 3001579 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyVPA0735 beta-sandwich domain-like 8054389 3001579 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DDUF1254e3vb9D3 A: alpha arraysX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: DUF1254ECOD (v295.2)
CDUF1254e3vb9C3 A: alpha arraysX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: DUF1254ECOD (v295.2)
BDUF1254e3vb9B3 A: alpha arraysX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: DUF1254ECOD (v295.2)
ADUF1214e3vb9A1 A: alpha arraysX: P-loop domains-likeH: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: DUF1214ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.20.25.10 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
D1.10.3360.10 Mainly Alpha Orthogonal Bundle VPA0735-like fold VPA0735-like domainCATH (4.3.0)
D2.60.40.1610 Mainly Beta Sandwich Immunoglobulin-like Domain of unknown function DUF1254CATH (4.3.0)
D2.60.120.600 Mainly Beta Sandwich Jelly Rolls Domain of unknown function DUF1214, C-terminal domainCATH (4.3.0)
C2.20.25.10 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
C1.10.3360.10 Mainly Alpha Orthogonal Bundle VPA0735-like fold VPA0735-like domainCATH (4.3.0)
C2.60.40.1610 Mainly Beta Sandwich Immunoglobulin-like Domain of unknown function DUF1254CATH (4.3.0)
C2.60.120.600 Mainly Beta Sandwich Jelly Rolls Domain of unknown function DUF1214, C-terminal domainCATH (4.3.0)
B2.20.25.10 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
B1.10.3360.10 Mainly Alpha Orthogonal Bundle VPA0735-like fold VPA0735-like domainCATH (4.3.0)
B2.60.40.1610 Mainly Beta Sandwich Immunoglobulin-like Domain of unknown function DUF1254CATH (4.3.0)
B2.60.120.600 Mainly Beta Sandwich Jelly Rolls Domain of unknown function DUF1214, C-terminal domainCATH (4.3.0)
A2.20.25.10 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
A1.10.3360.10 Mainly Alpha Orthogonal Bundle VPA0735-like fold VPA0735-like domainCATH (4.3.0)
A2.60.40.1610 Mainly Beta Sandwich Immunoglobulin-like Domain of unknown function DUF1254CATH (4.3.0)
A2.60.120.600 Mainly Beta Sandwich Jelly Rolls Domain of unknown function DUF1214, C-terminal domainCATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR010679Domain of unknown function DUF1254Domain
A, B, C, D
IPR037050Domain of unknown function DUF1254 superfamilyHomologous Superfamily
A, B, C, D
IPR037049Domain of unknown function DUF1214, C-terminal domain superfamilyHomologous Superfamily
A, B, C, D
IPR010621Domain of unknown function DUF1214Domain