3VAB
Crystal structure of Diaminopimelate decarboxylase from Brucella melitensis bound to PLP
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Orn_DAP_Arg_deC_C | e3vabA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Orn_DAP_Arg_deC_C | ECOD (1.6) |
A | Orn_DAP_Arg_deC_N | e3vabA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Orn_DAP_Arg_deC_N | ECOD (1.6) |
B | Orn_DAP_Arg_deC_C | e3vabB6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Orn_DAP_Arg_deC_C | ECOD (1.6) |
B | Orn_DAP_Arg_deC_N | e3vabB5 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Orn_DAP_Arg_deC_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.37.10 | Mainly Beta | Beta Barrel | Lyase, Ornithine Decarboxylase | Chain A, domain 1 | CATH (4.3.0) |
A | 3.20.20.10 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Alanine racemase | CATH (4.3.0) |
B | 2.40.37.10 | Mainly Beta | Beta Barrel | Lyase, Ornithine Decarboxylase | Chain A, domain 1 | CATH (4.3.0) |
B | 3.20.20.10 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Alanine racemase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02784 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain (Orn_Arg_deC_N) | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold. | Domain | |
PF00278 | Pyridoxal-dependent decarboxylase, C-terminal sheet domain (Orn_DAP_Arg_deC) | Pyridoxal-dependent decarboxylase, C-terminal sheet domain | These pyridoxal-dependent decarboxylases act on ornithine, lysine, arginine and related substrates. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029066 | PLP-binding barrel | Homologous Superfamily | |
IPR022643 | Orn/DAP/Arg decarboxylase 2, C-terminal | Domain | |
IPR009006 | Alanine racemase/group IV decarboxylase, C-terminal | Homologous Superfamily | |
IPR000183 | Ornithine/DAP/Arg decarboxylase | Family | |
IPR022657 | Orn/DAP/Arg decarboxylase 2, conserved site | Conserved Site | |
IPR022644 | Orn/DAP/Arg decarboxylase 2, N-terminal | Domain | |
IPR002986 | Diaminopimelate decarboxylase, LysA | Family | |
IPR022653 | Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site | Binding Site |