3V4D
Crystal structure of RutC protein a member of the YjgF family from E.coli
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | YjgF-like | 8059841 | 3001733 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | YjgF-like | 8059841 | 3001733 | SCOP2B (2022-06-29) |
C [auth F] | SCOP2B Superfamily | YjgF-like | 8059841 | 3001733 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2 Family | YjgF/L-PSP | 8059840 | 4001510 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2 Superfamily | YjgF-like | 8059841 | 3001733 | SCOP2 (2022-06-29) |
E [auth D] | SCOP2B Superfamily | YjgF-like | 8059841 | 3001733 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | YjgF-like | 8059841 | 3001733 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ribonuc_L-PSP | e3v4dA1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: YjgF-like (From Topology) | T: YjgF-like | F: Ribonuc_L-PSP | ECOD (1.6) |
B [auth C] | Ribonuc_L-PSP | e3v4dC1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: YjgF-like (From Topology) | T: YjgF-like | F: Ribonuc_L-PSP | ECOD (1.6) |
C [auth F] | Ribonuc_L-PSP | e3v4dF1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: YjgF-like (From Topology) | T: YjgF-like | F: Ribonuc_L-PSP | ECOD (1.6) |
D [auth B] | Ribonuc_L-PSP | e3v4dB1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: YjgF-like (From Topology) | T: YjgF-like | F: Ribonuc_L-PSP | ECOD (1.6) |
E [auth D] | Ribonuc_L-PSP | e3v4dD1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: YjgF-like (From Topology) | T: YjgF-like | F: Ribonuc_L-PSP | ECOD (1.6) |
F [auth E] | Ribonuc_L-PSP | e3v4dE1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: YjgF-like (From Topology) | T: YjgF-like | F: Ribonuc_L-PSP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1330.40 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
B [auth C] | 3.30.1330.40 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
C [auth F] | 3.30.1330.40 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
D [auth B] | 3.30.1330.40 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
E [auth D] | 3.30.1330.40 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
F [auth E] | 3.30.1330.40 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01042 | Endoribonuclease L-PSP (Ribonuc_L-PSP) | Endoribonuclease L-PSP | Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. Yjg ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019897 | RidA, conserved site | Conserved Site | |
IPR019898 | 3-aminoacrylate deaminase RutC | Family | |
IPR035959 | RutC-like superfamily | Homologous Superfamily | |
IPR006175 | YjgF/YER057c/UK114 family | Family |