3UIN
Complex between human RanGAP1-SUMO2, UBC9 and the IR1 domain from RanBP2
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3uina_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | Ubiquitin conjugating enzyme, UBC | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3uinb_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d3uinc_ | All alpha proteins | alpha-alpha superhelix | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UQ_con | e3uinA1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
B | Rad60-SLD | e3uinB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
C | RanGAP1_C | e3uinC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ras GEF (From Topology) | T: Ras GEF | F: RanGAP1_C | ECOD (1.6) |
D | IR1-M | e3uinD1 | A: extended segments | X: E3 SUMO-protein ligase RanBP2 fragment (From Topology) | H: E3 SUMO-protein ligase RanBP2 fragment (From Topology) | T: E3 SUMO-protein ligase RanBP2 fragment | F: IR1-M | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
B | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C | 1.25.40.200 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ran-GTPase activating protein 1, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain | |
PF11976 | Ubiquitin-2 like Rad60 SUMO-like (Rad60-SLD) | Ubiquitin-2 like Rad60 SUMO-like | - | Family | |
PF12185 | Nup358/RanBP2 E3 ligase domain (IR1-M) | Nup358/RanBP2 E3 ligase domain | This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00638, Pfam:PF00641, Pfam:PF00160. There are two conserved sequence motifs: TFFC and EDF. Nup358/RanBP2 is a nucl ... | Domain |