3U02
Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DUF1743 | e3u02A2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: DUF1743 | ECOD (1.6) |
A | TiaS | e3u02A1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: TiaS | ECOD (1.6) |
B | DUF1743 | e3u02B4 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: DUF1743 | ECOD (1.6) |
B | TiaS | e3u02B3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: TiaS | ECOD (1.6) |
C | DUF1743 | e3u02C2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: DUF1743 | ECOD (1.6) |
C | TiaS | e3u02C1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: TiaS | ECOD (1.6) |
D | DUF1743 | e3u02D4 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: DUF1743 | ECOD (1.6) |
D | TiaS | e3u02D3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: TiaS | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.2200 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
A | 3.90.600.20 | Alpha Beta | Alpha-Beta Complex | Glycinamide Ribonucleotide Synthetase | Chain A, domain 4 | CATH (4.3.0) |
B | 3.30.70.2200 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 3.90.600.20 | Alpha Beta | Alpha-Beta Complex | Glycinamide Ribonucleotide Synthetase | Chain A, domain 4 | CATH (4.3.0) |
C | 3.30.70.2200 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
C | 3.90.600.20 | Alpha Beta | Alpha-Beta Complex | Glycinamide Ribonucleotide Synthetase | Chain A, domain 4 | CATH (4.3.0) |
D | 3.30.70.2200 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
D | 3.90.600.20 | Alpha Beta | Alpha-Beta Complex | Glycinamide Ribonucleotide Synthetase | Chain A, domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22641 | TiaS FLD domain (TiaS-FLD) | TiaS FLD domain | This domain is found in tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS and related proteins. TiaS is an ATP-dependent agmatine transferase that catalyses the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2) [1]. Thi ... | Domain | |
PF08489 | Domain of unknown function (DUF1743) (DUF1743) | Domain of unknown function (DUF1743) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013696 | TiaS, FLD domain | Domain | |
IPR004365 | OB-fold nucleic acid binding domain, AA-tRNA synthetase-type | Domain | |
IPR053434 | tRNA(Ile2) 2-agmatinylcytidine synthetase | Family | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR024913 | tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS | Family |