3T5Q
3A structure of Lassa virus nucleoprotein in complex with ssRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Arenavirus nucleoprotein N-terminal domain-like | 8048310 | 4006049 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Arenavirus nucleoprotein N-terminal domain-like | 8053519 | 3002201 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Arenavirus nucleoprotein N-terminal domain-like | 8053519 | 3002201 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Arenavirus nucleoprotein N-terminal domain-like | 8053519 | 3002201 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Arenavirus nucleoprotein N-terminal domain-like | 8053519 | 3002201 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Arenavirus nucleoprotein N-terminal domain-like | 8053519 | 3002201 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Arenavirus nucleoprotein N-terminal domain-like | 8053519 | 3002201 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Arena_nucleocap | e3t5qA2 | A: alpha complex topology | X: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | H: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | T: N-terminal domain in Lassa fever virus nucleoprotein | F: Arena_nucleocap | ECOD (1.6) |
C [auth B] | Arena_nucleocap | e3t5qB1 | A: alpha complex topology | X: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | H: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | T: N-terminal domain in Lassa fever virus nucleoprotein | F: Arena_nucleocap | ECOD (1.6) |
E | Arena_nucleocap | e3t5qE1 | A: alpha complex topology | X: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | H: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | T: N-terminal domain in Lassa fever virus nucleoprotein | F: Arena_nucleocap | ECOD (1.6) |
G | Arena_nucleocap | e3t5qG2 | A: alpha complex topology | X: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | H: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | T: N-terminal domain in Lassa fever virus nucleoprotein | F: Arena_nucleocap | ECOD (1.6) |
I | Arena_nucleocap | e3t5qI2 | A: alpha complex topology | X: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | H: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | T: N-terminal domain in Lassa fever virus nucleoprotein | F: Arena_nucleocap | ECOD (1.6) |
K | Arena_nucleocap | e3t5qK1 | A: alpha complex topology | X: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | H: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | T: N-terminal domain in Lassa fever virus nucleoprotein | F: Arena_nucleocap | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
G | 1.10.150.550 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
G | 6.10.250.1200 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038115 | Nucleocapsid, C-terminal superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR000229 | Nucleocapsid protein, arenaviridae | Family | |
IPR035083 | Nucleocapsid, N-terminal, Arenaviridae | Domain | |
IPR035084 | Nucleocapsid, C-terminal, Arenaviridae | Domain |