3T3O
Molecular basis for the recognition and cleavage of RNA (CUGG) by the bifunctional 5'-3' exo/endoribonuclease RNase J
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Lactamase_B_6_1 | e3t3oA1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B_6_1 | ECOD (1.6) |
A | RnjA | e3t3oA3 | A: a+b complex topology | X: Flagellar protein FlgA N-terminal domain-like | H: RNase J C-terminal domain (From Topology) | T: RNase J C-terminal domain | F: RnjA | ECOD (1.6) |
A | MG423 | e3t3oA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MG423 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
A | 3.40.50.10710 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Metallo-hydrolase/oxidoreductase | CATH (4.3.0) |
A | 3.10.20.580 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07521 | Zn-dependent metallo-hydrolase RNA specificity domain (RMMBL) | Zn-dependent metallo-hydrolase RNA specificity domain | - | Motif | |
PF17770 | Ribonuclease J C-terminal domain (RNase_J_C) | Ribonuclease J C-terminal domain | This domain is found at the C-terminus of Ribonuclease J proteins. Its function is unknown, but deletion of this domain causes dissociation to monomers [2]. | Domain | |
PF22505 | Ribonuclease J, beta-CASP domain (RNase_J_b_CASP) | Ribonuclease J, beta-CASP domain | This domain is found in Ribonuclease J from Thermus thermophilus (RNaseJ) and similar bacterial proteins. RNaseJ is an RNase that has endonuclease and possibly 5'-3' exonuclease activity. It is probably involved in maturation of rRNA and in some orga ... | Domain | |
PF12706 | Beta-lactamase superfamily domain (Lactamase_B_2) | Beta-lactamase superfamily domain | This family is part of the beta-lactamase superfamily and is related to Pfam:PF00753. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001279 | Metallo-beta-lactamase | Domain | |
IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain | Domain | |
IPR004613 | Ribonuclease J | Family | |
IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Homologous Superfamily | |
IPR030854 | Ribonuclease J, bacteria | Family | |
IPR041636 | Ribonuclease J, C-terminal | Domain | |
IPR042173 | Ribonuclease J, domain 2 | Homologous Superfamily |