3SZK
Crystal Structure of Human metHaemoglobin Complexed with the First NEAT Domain of IsdH from Staphylococcus aureus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | Globin-like | 8039836 | 3000554 | SCOP2B (2021-05-27) |
E [auth A] | SCOP2B Superfamily | Globin-like | 8039836 | 3000554 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Globin-like | 8039838 | 3000554 | SCOP2B (2021-05-27) |
C [auth E] | SCOP2B Superfamily | Globin-like | 8039838 | 3000554 | SCOP2B (2021-05-27) |
D [auth F] | SCOP2 Family | NEAT domain | 8086483 | 4007541 | SCOP2 (2021-05-27) |
D [auth F] | SCOP2 Superfamily | NEAT domain-like | 8086484 | 3002054 | SCOP2 (2021-05-27) |
F [auth C] | SCOP2B Superfamily | NEAT domain-like | 8086484 | 3002054 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | PF00042 | e3szkD1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
E [auth A] | PF00042 | e3szkA1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
B | PF00042 | e3szkB1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
C [auth E] | PF00042 | e3szkE1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
D [auth F] | PF05031 | e3szkF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF05031 | ECOD (1.6) |
F [auth C] | PF05031 | e3szkC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF05031 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth D] | 1.10.490.10 | Mainly Alpha | Orthogonal Bundle | Globin-like | Globins | CATH (4.3.0) |
E [auth A] | 1.10.490.10 | Mainly Alpha | Orthogonal Bundle | Globin-like | Globins | CATH (4.3.0) |
B | 1.10.490.10 | Mainly Alpha | Orthogonal Bundle | Globin-like | Globins | CATH (4.3.0) |
C [auth E] | 1.10.490.10 | Mainly Alpha | Orthogonal Bundle | Globin-like | Globins | CATH (4.3.0) |
D [auth F] | 2.60.40.1850 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
F [auth C] | 2.60.40.1850 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D], E [auth A] | PF00042 | Globin (Globin) | Globin | - | Domain |
B, C [auth E] | PF00042 | Globin (Globin) | Globin | - | Domain |
D [auth F], F [auth C] | PF05031 | Iron Transport-associated domain (NEAT) | Iron Transport-associated domain | NEAT domains are heme and/or hemoprotein-binding modules highly conserved in secondary structure [1]. They have roles in hemoprotein binding, heme extraction and heme transfer [2] | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D], E [auth A] | IPR002338 | Hemoglobin, alpha-type | Family |
A [auth D], E [auth A] | IPR002339 | Hemoglobin, pi | Family |
A [auth D], E [auth A] | IPR009050 | Globin-like superfamily | Homologous Superfamily |
A [auth D], E [auth A] | IPR012292 | Globin/Protoglobin | Homologous Superfamily |
A [auth D], E [auth A] | IPR000971 | Globin | Domain |
B, C [auth E] | IPR009050 | Globin-like superfamily | Homologous Superfamily |
B, C [auth E] | IPR012292 | Globin/Protoglobin | Homologous Superfamily |
B, C [auth E] | IPR000971 | Globin | Domain |
B, C [auth E] | IPR002337 | Hemoglobin, beta-type | Family |
D [auth F], F [auth C] | IPR005877 | YSIRK Gram-positive signal peptide | Domain |
D [auth F], F [auth C] | IPR006635 | NEAT domain | Domain |
D [auth F], F [auth C] | IPR019930 | Iron-regulated surface determinant protein H | Family |
D [auth F], F [auth C] | IPR048652 | Iron-regulated surface determinant protein H/B, linker domain | Domain |
D [auth F], F [auth C] | IPR037250 | NEAT domain superfamily | Homologous Superfamily |
D [auth F], F [auth C] | IPR019931 | LPXTG cell wall anchor domain | Domain |