3SWN
Structure of the LSm657 Complex: An Assembly Intermediate of the LSm1 7 and LSm2 8 Rings
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063480 | 3000419 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063480 | 3000419 | SCOP2B (2022-06-29) |
H [auth P] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063480 | 3000419 | SCOP2B (2022-06-29) |
K [auth S] | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8063479 | 4001809 | SCOP2 (2022-06-29) |
K [auth S] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8063480 | 3000419 | SCOP2 (2022-06-29) |
L [auth T] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063460 | 3000419 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8063459 | 4001809 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8063460 | 3000419 | SCOP2 (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063460 | 3000419 | SCOP2B (2022-06-29) |
I [auth Q] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063460 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | LSM | e3swnC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
D [auth F] | LSM | e3swnF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
G [auth O] | LSM | e3swnO1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
J [auth R] | LSM | e3swnR1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
B [auth A] | LSM | e3swnA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
E [auth D] | LSM | e3swnD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
H [auth P] | LSM | e3swnP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
K [auth S] | LSM | e3swnS1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
L [auth T] | LSM | e3swnT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
C [auth B] | LSM | e3swnB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
F [auth E] | LSM | e3swnE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
I [auth Q] | LSM | e3swnQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D [auth F] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
G [auth O] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
J [auth R] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B [auth A] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
E [auth D] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
H [auth P] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
K [auth S] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
L [auth T] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C [auth B] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
F [auth E] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
I [auth Q] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], D [auth F], G [auth O], J [auth R] | PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
B [auth A], E [auth D], H [auth P], K [auth S] | PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
C [auth B], F [auth E], I [auth Q], L [auth T] | PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |