3QFQ
Asymmetric Assembly of Merkel Cell Polyomavirus Large T-antigen Origin Binding Domains at the Viral Origin
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth E] | d3qfqe_ | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | automated matches | automated matches | (Merkel cell polyomavirus ) [TaxId: 493803 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8071398 | 3001937 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8071398 | 3001937 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2 Family | The origin DNA-binding domain of SV40 T-antigen | 8071397 | 4001598 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2 Superfamily | Origin of replication-binding domain, RBD-like | 8071398 | 3001937 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | T_Ag_DNA_bind | e3qfqA1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: T_Ag_DNA_bind | ECOD (1.6) |
B | T_Ag_DNA_bind | e3qfqB1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: T_Ag_DNA_bind | ECOD (1.6) |
C [auth E] | T_Ag_DNA_bind | e3qfqE1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: T_Ag_DNA_bind | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1310.20 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
B | 3.40.1310.20 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
C [auth E] | 3.40.1310.20 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth E] | PF02217 | Origin of replication binding protein (T_Ag_DNA_bind) | Origin of replication binding protein | This domain of large T antigen binds to the SV40 origin of DNA replication [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, C [auth E] | IPR017910 | Zinc finger, large T-antigen D1-type | Domain |
A, B, C [auth E] | IPR014015 | Helicase, superfamily 3, DNA virus | Domain |
A, B, C [auth E] | IPR003133 | T antigen, Ori-binding | Domain |
A, B, C [auth E] | IPR037102 | Zinc finger, large T-antigen D1 domain superfamily | Homologous Superfamily |
A, B, C [auth E] | IPR010932 | Large T antigen, polyomavirus, C-terminal | Domain |
A, B, C [auth E] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |