3Q5E
crystal structure of human Atlastin-1 (residues 1-447) bound to GDP, crystal form 2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | GBP helical domain-like | 8019678 | 3001145 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019680 | 3002022 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019680 | 3002022 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | GBP helical domain-like | 8019678 | 3001145 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | GBP helical domain-like | 8019678 | 3001145 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019680 | 3002022 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019680 | 3002022 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | GBP helical domain-like | 8019678 | 3001145 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | KOG2037 | e3q5eC1 | A: alpha bundles | X: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | H: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | T: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | F: KOG2037 | ECOD (1.6) |
B [auth C] | MCM_AAA | e3q5eC2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
C [auth E] | KOG2037 | e3q5eE1 | A: alpha bundles | X: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | H: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | T: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | F: KOG2037 | ECOD (1.6) |
C [auth E] | MCM_AAA | e3q5eE2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
A | KOG2037 | e3q5eA2 | A: alpha bundles | X: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | H: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | T: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | F: KOG2037 | ECOD (1.6) |
A | MCM_AAA | e3q5eA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
D [auth G] | KOG2037 | e3q5eG1 | A: alpha bundles | X: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | H: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | T: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | F: KOG2037 | ECOD (1.6) |
D [auth G] | MCM_AAA | e3q5eG2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | PF02263 | Guanylate-binding protein, N-terminal domain (GBP) | Guanylate-binding protein, N-terminal domain | Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | IPR036543 | Guanylate-binding protein, C-terminal domain superfamily | Homologous Superfamily |
A, B [auth C], C [auth E], D [auth G] | IPR030386 | GB1/RHD3-type guanine nucleotide-binding (G) domain | Domain |
A, B [auth C], C [auth E], D [auth G] | IPR015894 | Guanylate-binding protein, N-terminal | Domain |
A, B [auth C], C [auth E], D [auth G] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |