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3Q13
The Structure of the Ca2+-binding, Glycosylated F-spondin Domain of F-spondin, A C2-domain Variant from Extracellular Matrix
External Resource: Annotation
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
PF06468
e3q13A1
A: beta sandwiches
X: Immunoglobulin-like beta-sandwich
H: C2 domain (From Topology)
T: C2 domain
F: PF06468
ECOD (1.6)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
2.60.40.2130
Mainly Beta
Sandwich
Immunoglobulin-like
F-spondin domain
CATH (4.3.0)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF06468
Spondin_N (Spond_N)
Spondin_N
This conserved region is found at the in the N-terminal half of several Spondin proteins. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells ([1]).
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Spondin-1
structural molecule activity
extracellular matrix structural constituent
protein binding
binding
LBD domain binding
protein domain specific binding
cation binding
ion binding
metal ion binding
small molecule binding
amyloid precursor protein catabolic process
regulation of biological process
organonitrogen compound metabolic process
positive regulation of protein metabolic process
regulation of protein metabolic process
biological regulation
positive regulation of biological process
primary metabolic process
regulation of amyloid precursor protein catabolic process
regulation of macromolecule metabolic process
regulation of primary metabolic process
positive regulation of metabolic process
metabolic process
positive regulation of macromolecule metabolic process
amyloid precursor protein catabolic process
regulation of biological process
organonitrogen compound metabolic process
positive regulation of protein metabolic process
regulation of protein metabolic process
biological regulation
positive regulation of biological process
primary metabolic process
regulation of amyloid precursor protein catabolic process
regulation of macromolecule metabolic process
regulation of primary metabolic process
positive regulation of metabolic process
metabolic process
positive regulation of macromolecule metabolic process
protein metabolic process
macromolecule metabolic process
positive regulation of amyloid precursor protein catabolic process
amyloid precursor protein metabolic process
regulation of metabolic process
regulation of amide metabolic process
regulation of amyloid-beta formation
negative regulation of biological process
negative regulation of amyloid precursor protein catabolic process
amyloid-beta metabolic process
amide metabolic process
negative regulation of protein metabolic process
amyloid-beta formation
negative regulation of macromolecule metabolic process
negative regulation of amyloid-beta formation
negative regulation of amide metabolic process
negative regulation of metabolic process
cell adhesion
cellular process
regulation of protein maturation
positive regulation of protein maturation
regulation of cellular process
cellular biosynthetic process
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
positive regulation of protein processing
protein maturation
regulation of proteolysis
positive regulation of biosynthetic process
proteolysis
positive regulation of cellular process
regulation of biosynthetic process
cellular metabolic process
regulation of cellular metabolic process
gene expression
macromolecule biosynthetic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
positive regulation of gene expression
positive regulation of proteolysis
regulation of protein processing
protein processing
regulation of macromolecule biosynthetic process
positive regulation of cellular biosynthetic process
Less
membrane-bounded organelle
intracellular anatomical structure
membrane-enclosed lumen
cellular anatomical entity
intracellular membrane-bounded organelle
endomembrane system
intracellular organelle lumen
endoplasmic reticulum lumen
intracellular organelle
organelle lumen
organelle
endoplasmic reticulum
cytoplasm
cell periphery
membrane-bounded organelle
intracellular anatomical structure
membrane-enclosed lumen
cellular anatomical entity
intracellular membrane-bounded organelle
endomembrane system
intracellular organelle lumen
endoplasmic reticulum lumen
intracellular organelle
organelle lumen
organelle
endoplasmic reticulum
cytoplasm
cell periphery
extracellular matrix
external encapsulating structure
extracellular region
extracellular space
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR000884
Thrombospondin type-1 (TSP1) repeat
Repeat
A
IPR042307
Reeler domain superfamily
Homologous Superfamily
A
IPR036383
Thrombospondin type-1 (TSP1) repeat superfamily
Homologous Superfamily
A
IPR002861
Reeler domain
Domain
A
IPR009465
Spondin, N-terminal
Domain
A
IPR044004
Spondin-like TSP1 domain
Domain
A
IPR038678
Spondin, N-terminal domain superfamily
Homologous Superfamily
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