Annotations: 3PYL

Crystal structure of aspartate beta-semialdehide dehydrogenase from Streptococcus pneumoniae with D-2,3-diaminopropionate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3pyld1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain	Aspartate beta-semialdehyde dehydrogenase	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
D	d3pyld2	Alpha and beta proteins (a+b)	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	GAPDH-like	Aspartate beta-semialdehyde dehydrogenase	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
C	d3pylc1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain	Aspartate beta-semialdehyde dehydrogenase	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
C	d3pylc2	Alpha and beta proteins (a+b)	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	GAPDH-like	Aspartate beta-semialdehyde dehydrogenase	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
C	d3pylc3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
B	d3pylb1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain	Aspartate beta-semialdehyde dehydrogenase	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
B	d3pylb2	Alpha and beta proteins (a+b)	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	GAPDH-like	Aspartate beta-semialdehyde dehydrogenase	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
A	d3pyla1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain	Aspartate beta-semialdehyde dehydrogenase	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
A	d3pyla2	Alpha and beta proteins (a+b)	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	GAPDH-like	Aspartate beta-semialdehyde dehydrogenase	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)
A	d3pyla3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus pneumoniae SP23-BS72 ) [TaxId: 406563 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	GAPDH-like	8058758	3000043	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GAPDH-like	8058758	3000043	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GAPDH-like	8058758	3000043	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GAPDH-like	8058758	3000043	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PUF	e3pylD1	A: alpha arrays	X: Insertion subdomain in DsbA-like	H: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	T: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	F: PUF	ECOD (v295.2)
C	Calreticulin	e3pylC1	A: alpha arrays	X: Major vault protein (MVP) structural repeat domain	H: Major vault protein (MVP) structural repeat domain	T: Major vault protein (MVP) structural repeat domain	F: Calreticulin	ECOD (v295.2)
B	PUA	e3pylB3	A: alpha arrays	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: Fusion glycoprotein F2	F: PUA	ECOD (v295.2)
A	PUF	e3pylA1	A: alpha arrays	X: Insertion subdomain in DsbA-like	H: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	T: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	F: PUF	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01118	Semialdehyde dehydrogenase, NAD binding domain (Semialdhyde_dh)	Semialdehyde dehydrogenase, NAD binding domain	This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase	Domain
A, B, C, D	PF02774	Semialdehyde dehydrogenase, dimerisation domain (Semialdhyde_dhC)	Semialdehyde dehydrogenase, dimerisation domain	This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Aspartate-semialdehyde dehydrogenase	binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding NADP binding small molecule binding NAD binding protein binding protein dimerization activity oxidoreductase activity aspartate-semialdehyde dehydrogenase (NADP+) activity oxidoreductase activity, acting on the aldehyde or oxo group of donors binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding NADP binding small molecule binding NAD binding protein binding protein dimerization activity oxidoreductase activity aspartate-semialdehyde dehydrogenase (NADP+) activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	small molecule biosynthetic process oxoacid metabolic process aspartate family amino acid biosynthetic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process L-threonine metabolic process carboxylic acid biosynthetic process proteinogenic amino acid metabolic process amino acid biosynthetic process L-threonine biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process small molecule biosynthetic process oxoacid metabolic process aspartate family amino acid biosynthetic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process L-threonine metabolic process carboxylic acid biosynthetic process proteinogenic amino acid metabolic process amino acid biosynthetic process L-threonine biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process cellular process small molecule metabolic process L-homoserine metabolic process non-proteinogenic amino acid metabolic process L-homoserine biosynthetic process non-proteinogenic amino acid biosynthetic process sulfur amino acid metabolic process L-methionine metabolic process 'de novo' L-methionine biosynthetic process sulfur compound biosynthetic process sulfur compound metabolic process L-methionine biosynthetic process sulfur amino acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012080	Aspartate-semialdehyde dehydrogenase	Family
A, B, C, D	IPR012280	Semialdehyde dehydrogenase, dimerisation domain	Domain
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR005986	Aspartate-semialdehyde dehydrogenase, beta-type	Family
A, B, C, D	IPR000534	Semialdehyde dehydrogenase, NAD-binding	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.