3OWG
Crystal structure of vaccinia virus Polyadenylate polymerase(vp55)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3owga_ | Multi-domain proteins (alpha and beta) | Poly(A) polymerase catalytic subunit-like | Poly(A) polymerase catalytic subunit-like | Poxvirus poly(A) polymerase catalytic subunit-like | automated matches | VACV (Vaccinia virus WR ) [TaxId: 10254 ], | SCOPe (2.08) |
B | d3owgb_ | Multi-domain proteins (alpha and beta) | Poly(A) polymerase catalytic subunit-like | Poly(A) polymerase catalytic subunit-like | Poxvirus poly(A) polymerase catalytic subunit-like | automated matches | VACV (Vaccinia virus WR ) [TaxId: 10254 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Poxvirus poly(A) polymerase N-terminal domain-like | 8055708 | 3002298 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Poly(A) polymerase C-terminal domain-like | 8032899 | 3001629 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleotidyltransferase-like | 8055710 | 3000129 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Poxvirus poly(A) polymerase N-terminal domain-like | 8055708 | 3002298 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Poly(A) polymerase C-terminal domain-like | 8032899 | 3001629 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleotidyltransferase-like | 8055710 | 3000129 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pox_polyA_pol_N | e3owgA4 | A: alpha arrays | X: N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit (From Topology) | H: N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit (From Topology) | T: N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit | F: Pox_polyA_pol_N | ECOD (1.6) |
A | Pox_polyA_pol | e3owgA5 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: Pox_polyA_pol | ECOD (1.6) |
A | Pox_polyA_pol_C | e3owgA6 | A: a+b complex topology | X: C-terminal a+b domain in Poly(A) polymerase catalytic subunit (From Topology) | H: C-terminal a+b domain in Poly(A) polymerase catalytic subunit (From Topology) | T: C-terminal a+b domain in Poly(A) polymerase catalytic subunit | F: Pox_polyA_pol_C | ECOD (1.6) |
B | Pox_polyA_pol_N | e3owgB4 | A: alpha arrays | X: N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit (From Topology) | H: N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit (From Topology) | T: N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit | F: Pox_polyA_pol_N | ECOD (1.6) |
B | Pox_polyA_pol | e3owgB5 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: Pox_polyA_pol | ECOD (1.6) |
B | Pox_polyA_pol_C | e3owgB6 | A: a+b complex topology | X: C-terminal a+b domain in Poly(A) polymerase catalytic subunit (From Topology) | H: C-terminal a+b domain in Poly(A) polymerase catalytic subunit (From Topology) | T: C-terminal a+b domain in Poly(A) polymerase catalytic subunit | F: Pox_polyA_pol_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1270.320 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
A | 3.30.460.60 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
B | 1.20.1270.320 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
B | 3.30.460.60 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03296 | Poxvirus poly(A) polymerase nucleotidyltransferase domain (Pox_polyA_pol) | Poxvirus poly(A) polymerase nucleotidyltransferase domain | - | Domain | |
PF12629 | Poxvirus poly(A) polymerase C-terminal domain (Pox_polyA_pol_C) | Poxvirus poly(A) polymerase C-terminal domain | This domain is found at the C-terminus of the pox virus PolyA polymerase protein [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038337 | Poxvirus poly(A) polymerase, catalytic subunit, N-terminal domain superfamily | Homologous Superfamily | |
IPR024397 | Poxvirus poly(A) polymerase, catalytic subunit, C-terminal | Domain | |
IPR004976 | Poly(A) polymerase catalytic subunit, Poxvirus | Family | |
IPR038419 | Poly(A) polymerase, nucleotidyltransferase domain superfamily, Poxvirus | Homologous Superfamily | |
IPR024231 | Poly(A) polymerase, nucleotidyltransferase domain, Poxvirus | Domain | |
IPR037265 | Poly(A) polymerase catalytic subunit superfamily | Homologous Superfamily | |
IPR024398 | Poxvirus poly(A) polymerase, catalytic subunit, N-terminal | Domain |