3NJA
The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PAS_11 | e3njaA2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11 | ECOD (1.6) |
B | PAS_11 | e3njaB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11 | ECOD (1.6) |
C | PAS_11 | e3njaC1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11 | ECOD (1.6) |
D | PAS_11 | e3njaD1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
A | 2.10.70.100 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
B | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
B | 2.10.70.100 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
C | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
C | 2.10.70.100 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
D | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
D | 2.10.70.100 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR000700 | PAS-associated, C-terminal | Domain | |
IPR013655 | PAS fold-3 | Domain | |
IPR000014 | PAS domain | Domain | |
IPR000160 | GGDEF domain | Domain | |
IPR013656 | PAS fold-4 | Domain | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR052163 | Diguanylate Cyclase/Regulatory Protein | Family | |
IPR029787 | Nucleotide cyclase | Homologous Superfamily |