The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DF5_F8_type_Ce3njaD1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: F5_F8_type_CECOD (v294.2)
CF5_F8_type_Ce3njaC1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: F5_F8_type_CECOD (v294.2)
BF5_F8_type_Ce3njaB1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: F5_F8_type_CECOD (v294.2)
ATubuline3njaA2 A: beta barrelsX: POZ domainH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: TubulinECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
D2.10.70.100 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
C3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
C2.10.70.100 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
B3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
B2.10.70.100 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
A3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
A2.10.70.100 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF08447PAS fold (PAS_3)PAS foldThe PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. Domain

InterPro: Protein Family Classification InterPro Database Homepage