3MKZ
Structure of SopB(155-272)-18mer complex, P21 form
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PRK13698 | e3mkzA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PRK13698 | ECOD (1.6) |
B | PRK13698 | e3mkzB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PRK13698 | ECOD (1.6) |
E [auth U] | PRK13698 | e3mkzU1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PRK13698 | ECOD (1.6) |
H [auth N] | PRK13698 | e3mkzN1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PRK13698 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.2830 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
B | 1.10.10.2830 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
E [auth U] | 1.10.10.2830 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
H [auth N] | 1.10.10.2830 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, E [auth U], H [auth N] | PF18090 | Centromere-binding protein HTH domain (SoPB_HTH) | Centromere-binding protein HTH domain | This domain is found in centromere-binding protein (SopB). SopB displays an intriguing range of DNA-binding properties essential for partition; it binds the centromere to form a partition complex, which recruits NTPase (SopA), and it also inhibits So ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B, E [auth U], H [auth N] | Protein sopB | - | ||
C, D, F [auth Y], G [auth Z] | DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, E [auth U], H [auth N] | IPR036086 | ParB/Sulfiredoxin superfamily | Homologous Superfamily |
A, B, E [auth U], H [auth N] | IPR040873 | SopB, HTH domain | Domain |
A, B, E [auth U], H [auth N] | IPR004437 | ParB/RepB/Spo0J partition protein | Domain |
A, B, E [auth U], H [auth N] | IPR003115 | ParB/Sulfiredoxin | Domain |