3MEM
Crystal structure of a Putative signal transduction protein (Maqu_0641) from MARINOBACTER AQUAEOLEI VT8 at 2.25 A resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HDOD | e3memA1 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: HDOD | ECOD (1.6) |
A | tRNA_edit | e3memA2 | A: a+b complex topology | X: YbaK/ProRS associated domain (From Topology) | H: YbaK/ProRS associated domain (From Topology) | T: YbaK/ProRS associated domain | F: tRNA_edit | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.960.10 | Alpha Beta | Alpha-Beta Complex | YbaK protein | YbaK/aminoacyl-tRNA synthetase-associated domain | CATH (4.3.0) |
A | 1.10.3210.10 | Mainly Alpha | Orthogonal Bundle | Hypothetical protein af1432 | Hypothetical protein af1432 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08668 | HDOD domain (HDOD) | HDOD domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Putative signal transduction protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR052340 | Ribonuclease Y/Cyclic di-GMP phosphodiesterase | Family | |
IPR013976 | Metal-dependent hydrolase HDOD | Domain | |
IPR036754 | YbaK/aminoacyl-tRNA synthetase-associated domain superfamily | Homologous Superfamily | |
IPR014627 | Uncharacterised conserved protein UCP036888, signal transduction HD-GYP-like, PA5346 type | Family |