3M85
Archaeoglobus fulgidus exosome y70a with RNA bound to the active site
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033521 | 3000346 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033518 | 3000100 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033521 | 3000346 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033518 | 3000100 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033521 | 3000346 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033518 | 3000100 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033527 | 3000346 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033526 | 3000100 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033527 | 3000346 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033526 | 3000100 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033526 | 3000100 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033527 | 3000346 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EXOSC1_1 | e3m85A1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EXOSC1_1 | ECOD (1.6) |
A | ECR1_N_1 | e3m85A2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_1 | ECOD (1.6) |
B | EXOSC1_1 | e3m85B1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EXOSC1_1 | ECOD (1.6) |
B | ECR1_N_1 | e3m85B2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_1 | ECOD (1.6) |
C | EXOSC1_1 | e3m85C1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EXOSC1_1 | ECOD (1.6) |
C | ECR1_N_1 | e3m85C2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_1 | ECOD (1.6) |
D | RNase_PH | e3m85D2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
D | RNase_PH_C_3 | e3m85D1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
F | RNase_PH | e3m85F2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
F | RNase_PH_C_3 | e3m85F1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
E | RNase_PH | e3m85E2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
E | RNase_PH_C_3 | e3m85E1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
G | RNase_PH_2 | e3m85G2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
G | RNase_PH_C_1 | e3m85G1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
H | RNase_PH_2 | e3m85H2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
H | RNase_PH_C_1 | e3m85H1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
I | RNase_PH_2 | e3m85I2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
I | RNase_PH_C_1 | e3m85I1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14382 | Exosome complex exonuclease RRP4 N-terminal region (ECR1_N) | Exosome complex exonuclease RRP4 N-terminal region | ECR1_N is an N-terminal region of the exosome complex exonuclease RRP proteins. It is a G-rich domain which structurally is a rudimentary single hybrid fold with a permuted topology. | Domain | |
PF10447 | Exosome component EXOSC1/CSL4 (EXOSC1) | Exosome component EXOSC1/CSL4 | This family of proteins are components of the exosome 3'->5' exoribonuclease complex. The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [1]. | Domain | |
PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |