Skip to main content

 3M6Y | pdb_00003m6y

Structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at 1.45 a resolution.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DMreCe3m6yD1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: MreCECOD (v295.2)
CMreCe3m6yC1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: MreCECOD (v295.2)
BMreCe3m6yB1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: MreCECOD (v295.2)
AMreCe3m6yA1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: MreCECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
C3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
B3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
A3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF07071KDGP aldolase (KDGP_aldolase)KDGP aldolaseDgaF is part of the dga operon required for wild-type growth of Salmonella Typhimurium with D-glucosaminate. It catalyses the conversion of keto-3-deoxygluconate 6-phosphate (KDGP) to yield pyruvate and glyceraldehyde-3-phosphate. Orthologues of the ...DgaF is part of the dga operon required for wild-type growth of Salmonella Typhimurium with D-glucosaminate. It catalyses the conversion of keto-3-deoxygluconate 6-phosphate (KDGP) to yield pyruvate and glyceraldehyde-3-phosphate. Orthologues of the dga genes are largely restricted to certain enteric bacteria and a few species in the phylum Firmicutes [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
4-Hydroxy-2-oxoglutarate aldolase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR0107632-dehydro-3-deoxy-phosphogluconate aldolaseFamily
A, B, C, D
IPR013785Aldolase-type TIM barrelHomologous Superfamily