3M4W
Structural basis for the negative regulation of bacterial stress response by RseB
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | LolA-like | 8054207 | 3001964 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TM1622-like | 8054208 | 3001463 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TM1622-like | 8054208 | 3001463 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | LolA-like | 8054207 | 3001964 | SCOP2B (2022-06-29) |
C | SCOP2 Family | MucB/RseB N-terminal domain-like | 8045111 | 4004295 | SCOP2 (2022-06-29) |
C | SCOP2 Family | MucB/RseB C-terminal domain-like | 8046590 | 4005177 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | LolA-like | 8054207 | 3001964 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | TM1622-like | 8054208 | 3001463 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | LolA-like | 8054207 | 3001964 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TM1622-like | 8054208 | 3001463 | SCOP2B (2022-06-29) |
H | SCOP2 Family | RseA C-terminal region-like | 8045049 | 4004277 | SCOP2 (2022-06-29) |
H | SCOP2 Superfamily | RseA C-terminal region-like | 8054206 | 3002283 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03888 | e3m4wA1 | A: beta meanders | X: Lipoprotein localization factors LolAB | H: Lipoprotein localization factors LolAB (From Topology) | T: Lipoprotein localization factors LolAB | F: PF03888 | ECOD (1.6) |
A | PF17188 | e3m4wA2 | A: a+b three layers | X: Mog1p/PsbP-like | H: C-terminal domain in sigma-E factor regulatory protein rseB (From Topology) | T: C-terminal domain in sigma-E factor regulatory protein rseB | F: PF17188 | ECOD (1.6) |
B | PF03888 | e3m4wB1 | A: beta meanders | X: Lipoprotein localization factors LolAB | H: Lipoprotein localization factors LolAB (From Topology) | T: Lipoprotein localization factors LolAB | F: PF03888 | ECOD (1.6) |
B | PF17188 | e3m4wB2 | A: a+b three layers | X: Mog1p/PsbP-like | H: C-terminal domain in sigma-E factor regulatory protein rseB (From Topology) | T: C-terminal domain in sigma-E factor regulatory protein rseB | F: PF17188 | ECOD (1.6) |
C | PF03888 | e3m4wC3 | A: beta meanders | X: Lipoprotein localization factors LolAB | H: Lipoprotein localization factors LolAB (From Topology) | T: Lipoprotein localization factors LolAB | F: PF03888 | ECOD (1.6) |
C | PF17188 | e3m4wC2 | A: a+b three layers | X: Mog1p/PsbP-like | H: C-terminal domain in sigma-E factor regulatory protein rseB (From Topology) | T: C-terminal domain in sigma-E factor regulatory protein rseB | F: PF17188 | ECOD (1.6) |
D | PF03888 | e3m4wD3 | A: beta meanders | X: Lipoprotein localization factors LolAB | H: Lipoprotein localization factors LolAB (From Topology) | T: Lipoprotein localization factors LolAB | F: PF03888 | ECOD (1.6) |
D | PF17188 | e3m4wD2 | A: a+b three layers | X: Mog1p/PsbP-like | H: C-terminal domain in sigma-E factor regulatory protein rseB (From Topology) | T: C-terminal domain in sigma-E factor regulatory protein rseB | F: PF17188 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.50.20.10 | Mainly Beta | Clam | outer membrane lipoprotein receptor (LolB), chain A | Lipoprotein localisation LolA/LolB/LppX | CATH (4.3.0) |
B | 2.50.20.10 | Mainly Beta | Clam | outer membrane lipoprotein receptor (LolB), chain A | Lipoprotein localisation LolA/LolB/LppX | CATH (4.3.0) |
C | 2.50.20.10 | Mainly Beta | Clam | outer membrane lipoprotein receptor (LolB), chain A | Lipoprotein localisation LolA/LolB/LppX | CATH (4.3.0) |
D | 2.50.20.10 | Mainly Beta | Clam | outer membrane lipoprotein receptor (LolB), chain A | Lipoprotein localisation LolA/LolB/LppX | CATH (4.3.0) |
E | 1.20.5.3960 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
F | 1.20.5.3960 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17188 | MucB/RseB C-terminal domain (MucB_RseB_C) | MucB/RseB C-terminal domain | Members of this family are regulators of the anti-sigma E protein RseD. | Domain | |
PF03888 | MucB/RseB N-terminal domain (MucB_RseB) | MucB/RseB N-terminal domain | Members of this family are regulators of the anti-sigma E protein RseD. | Domain | |
PF03873 | Anti sigma-E protein RseA, C-terminal domain (RseA_C) | Anti sigma-E protein RseA, C-terminal domain | Sigma-E is important for the induction of proteins involved in heat shock response. RseA binds sigma-E via its N-terminal domain, sequestering sigma-E and preventing transcription from heat-shock promoters [1]. The C-terminal domain is located in t ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005588 | MucB/RseB | Family | |
IPR033436 | MucB/RseB, C-terminal | Domain | |
IPR033434 | MucB/RseB, N-terminal | Domain | |
IPR038484 | MucB/RseB, C-terminal domain superfamily | Homologous Superfamily | |
IPR005573 | Anti sigma-E protein RseA, C-terminal | Domain | |
IPR036147 | Anti sigma-E protein RseA, N-terminal domain superfamily | Homologous Superfamily | |
IPR052383 | Anti-sigma-E factor RseA-like | Family | |
IPR026279 | Sigma-E factor negative regulatory protein RseA | Family | |
IPR005572 | Anti sigma-E protein RseA, N-terminal | Domain |