3LSO

Crystal structure of Putative membrane anchored protein from Corynebacterium diphtheriae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DIP2116 middle domain-like	8045893	4004747	SCOP2 (2021-05-27)
A	SCOP2 Family	DIP2116 N-terminal domain-like	8092338	4007768	SCOP2 (2021-05-27)
A	SCOP2 Family	DIP2116 C-terminal domain-like	8092340	4007769	SCOP2 (2021-05-27)
A	SCOP2 Superfamily	E set domains	8092337	3000070	SCOP2 (2021-05-27)
A	SCOP2 Superfamily	Leukocidin-like	8092339	3000256	SCOP2 (2021-05-27)
A	SCOP2 Superfamily	Bacterial adhesin-like	8092341	3000723	SCOP2 (2021-05-27)
B	SCOP2B Superfamily	Bacterial adhesin-like	8092341	3000723	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	Leukocidin-like	8092339	3000256	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	E set domains	8092337	3000070	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e3lsoA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF16640	e3lsoA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF16640	ECOD (1.6)
A	PF22089	e3lsoA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF22089	ECOD (1.6)
B	F_UNCLASSIFIED	e3lsoB9	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: F_UNCLASSIFIED	ECOD (1.6)
B	PF16640	e3lsoB8	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF16640	ECOD (1.6)
B	PF22089	e3lsoB7	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF22089	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.2270	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.60.40.2260	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.2270	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	2.60.40.2260	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF22089	DIP2116-like, N-terminal domain (DIP2116-like_N)	DIP2116-like, N-terminal domain	This domain is found at the N-terminal end of the putative membrane anchored protein DIP2116 from Corynebacterium diphtheriae (Swiss:Q6NEZ3). It shows an immunoglobulin-like fold.	Domain
B	PF22089	DIP2116-like, N-terminal domain (DIP2116-like_N)	DIP2116-like, N-terminal domain	This domain is found at the N-terminal end of the putative membrane anchored protein DIP2116 from Corynebacterium diphtheriae (Swiss:Q6NEZ3). It shows an immunoglobulin-like fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Putative membrane anchored protein	-	carbohydrate metabolic process primary metabolic process metabolic process	membrane cellular anatomical entity
B	Putative membrane anchored protein	-	carbohydrate metabolic process primary metabolic process metabolic process	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR032109	Bacterial Ig-like domain (group 3)	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR032109	Bacterial Ig-like domain (group 3)	Domain
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	MLZ	Parent Component: LYS RESID: AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085
A	MSE	Parent Component: MET RESID: AA0076
B	MLZ	Parent Component: LYS RESID: AA0076 , AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
B	MSE	Parent Component: MET RESID: AA0076 , AA0076

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.