3L9J
Selection of a novel highly specific TNFalpha antagonist: Insight from the crystal structure of the antagonist-TNFalpha complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | d3l9jc_ | Alpha and beta proteins (a+b) | C-type lectin-like | C-type lectin-like | C-type lectin domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth T] | d3l9jt_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | C-type lectin-like | 8037116 | 3001261 | SCOP2B (2022-06-29) |
B [auth T] | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Lectin_C | e3l9jC1 | A: a+b complex topology | X: C-type lectin-like (From Homology) | H: C-type lectin-like | T: C-type lectin-like | F: Lectin_C | ECOD (1.6) |
B [auth T] | TNF | e3l9jT1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 3.10.100.10 | Alpha Beta | Roll | Mannose-Binding Protein A | Chain A | CATH (4.3.0) |
B [auth T] | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth C] | TNFA (Tumor necrosis factor Alpha) | Protein | Homo sapiens (human) | - | - | RPI | TNF | IMGT (202438-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C] | PF00059 | Lectin C-type domain (Lectin_C) | Lectin C-type domain | This family includes both long and short form C-type | Domain |
B [auth T] | PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C] | IPR016187 | C-type lectin fold | Homologous Superfamily |
A [auth C] | IPR001304 | C-type lectin-like | Domain |
A [auth C] | IPR018378 | C-type lectin, conserved site | Conserved Site |
A [auth C] | IPR016186 | C-type lectin-like/link domain superfamily | Homologous Superfamily |
A [auth C] | IPR051663 | C-type lectin and Tetranectin domain-containing protein | Family |
B [auth T] | IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily |
B [auth T] | IPR006053 | Tumour necrosis factor | Family |
B [auth T] | IPR002959 | Tumour necrosis factor alpha | Family |
B [auth T] | IPR021184 | Tumour necrosis factor, conserved site | Conserved Site |
B [auth T] | IPR006052 | Tumour necrosis factor domain | Domain |