3KGD
Crystal structure of E. coli RNA 3' cyclase
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | EPT/RTPC-like | 8035758 | 3001530 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 8044394 | 3000413 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EPT/RTPC-like | 8035758 | 3001530 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 8044394 | 3000413 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | EPT/RTPC-like | 8035758 | 3001530 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | EPT/RTPC-like | 8035758 | 3001530 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | EPT/RTPC-like | 8035758 | 3001530 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 8044394 | 3000413 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | EPT/RTPC-like | 8035758 | 3001530 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | EPT/RTPC-like | 8035758 | 3001530 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | EPT/RTPC-like | 8035758 | 3001530 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 8044394 | 3000413 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01137 | e3kgdA1 | A: a+b two layers | X: IF3-like | H: EPT/RTPC-like (From Topology) | T: EPT/RTPC-like | F: PF01137 | ECOD (1.6) |
A | PF05189 | e3kgdA2 | A: a+b three layers | X: Thioredoxin-like | H: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology) | T: RNA 3'-terminal phosphate cyclase, RPTC, insert domain | F: PF05189 | ECOD (1.6) |
C | PF01137 | e3kgdC1 | A: a+b two layers | X: IF3-like | H: EPT/RTPC-like (From Topology) | T: EPT/RTPC-like | F: PF01137 | ECOD (1.6) |
C | PF05189 | e3kgdC2 | A: a+b three layers | X: Thioredoxin-like | H: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology) | T: RNA 3'-terminal phosphate cyclase, RPTC, insert domain | F: PF05189 | ECOD (1.6) |
D | PF01137 | e3kgdD1 | A: a+b two layers | X: IF3-like | H: EPT/RTPC-like (From Topology) | T: EPT/RTPC-like | F: PF01137 | ECOD (1.6) |
D | PF05189 | e3kgdD2 | A: a+b three layers | X: Thioredoxin-like | H: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology) | T: RNA 3'-terminal phosphate cyclase, RPTC, insert domain | F: PF05189 | ECOD (1.6) |
B | PF01137 | e3kgdB1 | A: a+b two layers | X: IF3-like | H: EPT/RTPC-like (From Topology) | T: EPT/RTPC-like | F: PF01137 | ECOD (1.6) |
B | PF05189 | e3kgdB2 | A: a+b three layers | X: Thioredoxin-like | H: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology) | T: RNA 3'-terminal phosphate cyclase, RPTC, insert domain | F: PF05189 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.65.10.20 | Alpha Beta | Alpha-beta prism | UDP-n-acetylglucosamine1-carboxyvinyl-transferase | Chain | CATH (4.3.0) |
A | 3.30.360.20 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
C | 3.65.10.20 | Alpha Beta | Alpha-beta prism | UDP-n-acetylglucosamine1-carboxyvinyl-transferase | Chain | CATH (4.3.0) |
C | 3.30.360.20 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
D | 3.65.10.20 | Alpha Beta | Alpha-beta prism | UDP-n-acetylglucosamine1-carboxyvinyl-transferase | Chain | CATH (4.3.0) |
D | 3.30.360.20 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
B | 3.65.10.20 | Alpha Beta | Alpha-beta prism | UDP-n-acetylglucosamine1-carboxyvinyl-transferase | Chain | CATH (4.3.0) |
B | 3.30.360.20 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05189 | RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert) | RNA 3'-terminal phosphate cyclase (RTC), insert domain | RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ... | Domain | |
PF01137 | RNA 3'-terminal phosphate cyclase (RTC) | RNA 3'-terminal phosphate cyclase | RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013792 | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | Homologous Superfamily | |
IPR023797 | RNA 3'-terminal phosphate cyclase domain | Domain | |
IPR000228 | RNA 3'-terminal phosphate cyclase | Family | |
IPR020719 | RNA 3'-terminal phosphate cyclase-like, conserved site | Conserved Site | |
IPR017770 | RNA 3'-terminal phosphate cyclase type 1 | Family | |
IPR037136 | RNA 3'-terminal phosphate cyclase domain superfamily | Homologous Superfamily | |
IPR013791 | RNA 3'-terminal phosphate cyclase, insert domain | Domain | |
IPR036553 | RNA 3'-terminal phosphate cyclase, insert domain superfamily | Homologous Superfamily |