3K1Q | pdb_00003k1q

Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	Ribosomal_S13_N	e3k1qX1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
W	Ribosomal_S13_N	e3k1qW1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
V	Ribosomal_S13_N	e3k1qV1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
U	Ribosomal_S13_N	e3k1qU1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
Q	Ribosomal_S13_N	e3k1qQ1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
P	Ribosomal_S13_N	e3k1qP1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
O	Ribosomal_S13_N	e3k1qO1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
K	Ribosomal_S13_N	e3k1qK1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
J	Ribosomal_S13_N	e3k1qJ1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
I	Ribosomal_S13_N	e3k1qI1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (v294.2)
Y	RVP	e3k1qY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
T	RVP	e3k1qT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
S	RVP	e3k1qS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
R	RVP	e3k1qR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
N	RVP	e3k1qN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
M	RVP	e3k1qM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
L	RVP	e3k1qL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
H	RVP	e3k1qH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
G	RVP	e3k1qG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
F	Capsid_VP7	e3k1qF1	A: beta barrels	X: Outer capsid protein sigma 3-related	H: Outer capsid protein sigma 3-related	T: Outer capsid protein sigma 3-related	F: Capsid_VP7	ECOD (v294.2)
E	RVP	e3k1qE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
D	RVP	e3k1qD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
C	zf-C2H2_6	e3k1qC2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: zf-C2H2_6	ECOD (v294.2)
C	Lamba1_VP3	e3k1qC1	A: beta barrels	X: Scaffolding protein GPB	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Lamba1_VP3	ECOD (v294.2)
B	Lamba1_VP3	e3k1qB2	A: beta barrels	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Lamba1_VP3	ECOD (v294.2)
A	VEGFR-1-like_Ig-like	e3k1qA9	A: beta barrels	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: VEGFR-1-like_Ig-like	ECOD (v294.2)

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.