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 3K1N | pdb_00003k1n

Crystal Structure of full-length BenM

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domaine3k1nB1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domainECOD (v295.2)
BLysR_substratee3k1nB2 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: LysR_substrateECOD (v295.2)
AFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domaine3k1nA1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domainECOD (v295.2)
ALysR_substratee3k1nA2 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: LysR_substrateECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
B3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
HTH-type transcriptional regulator benM -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR005119LysR, substrate-bindingDomain
A, B
IPR000847LysR, HTH, N-terminal domainDomain
A, B
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily