Crystal Structure of a 3B3 Variant, a Broadly Neutralizing HIV-1 scFv Antibody
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F [auth D] | adh_short | e3juyD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: adh_short | ECOD (v294.2) |
| E [auth F] | adh_short | e3juyF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: adh_short | ECOD (v294.2) |
| D [auth E] | adh_short | e3juyE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: adh_short | ECOD (v294.2) |
| C | adh_short | e3juyC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: adh_short | ECOD (v294.2) |
| B [auth A] | adh_short | e3juyA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: adh_short | ECOD (v294.2) |
| A [auth B] | Spt4 | e3juyB1 | A: beta barrels | X: Cystatin-like | H: NTF2-like | T: NTF2-like | F: Spt4 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| E [auth F] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| D [auth E] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| A [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| 3B3, anti-gp120 [HIV-1], neutralizing | SCFV-HEAVY-KAPPA | Homo sapiens (human) | IGHV1-3*01, IGHJ6*03, IGKV3-20*01, IGKJ2*01 | V-DOMAIN VH, V-DOMAIN V-KAPPA | IG | SCFV-HEAVY-KAPPA | IMGT (202617-0) |














