3JSV
Crystal structure of mouse NEMO CoZi in complex with Lys63-linked di-ubiquitin
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3jsva_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3jsvb_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | NEMO CC2-LZ-like | 8090863 | 3002465 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | NEMO CC2-LZ-like | 8090863 | 3002465 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ubiquitin_1 | e3jsvA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
B | ubiquitin_1 | e3jsvB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
B | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C | 1.20.5.990 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Nemo cc2-lz domain - 1d5 darpin complex | CATH (4.3.0) |
D | 1.20.5.990 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Nemo cc2-lz domain - 1d5 darpin complex | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR034735 | NEMO, Zinc finger | Domain | |
IPR021063 | NF-kappa-B essential modulator NEMO, N-terminal | Domain | |
IPR032419 | NF-kappa-B essential modulator NEMO, CC2-LZ domain | Domain | |
IPR051301 | Optineurin/NF-kappa-B Essential Modulator | Family |