Annotations: 3J9O

CryoEM structure of a type VI secretion system

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e3j9oL1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F:	ECOD (v295.2)
J		e3j9oJ1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F:	ECOD (v295.2)
H		e3j9oH1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F:	ECOD (v295.2)
F	SBP_bac_1	e3j9oF1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v295.2)
D	Pentaxin	e3j9oD1	A: alpha arrays	X: Alpha-beta plaits	H: Protease propeptides/inhibitors	T: Protease propeptides/inhibitors	F: Pentaxin	ECOD (v295.2)
B	Peptidase_M28	e3j9oB1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M28	ECOD (v295.2)
K	Mtrc-MtrF_II-IV_dom	e3j9oK1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: Mtrc-MtrF_II-IV_dom	ECOD (v295.2)
I	Mtrc-MtrF_II-IV_dom	e3j9oI1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: Mtrc-MtrF_II-IV_dom	ECOD (v295.2)
G	Mtrc-MtrF_II-IV_dom	e3j9oG1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: Mtrc-MtrF_II-IV_dom	ECOD (v295.2)
E	Mtrc-MtrF_II-IV_dom	e3j9oE1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: Mtrc-MtrF_II-IV_dom	ECOD (v295.2)
C	Nup160	e3j9oC1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Nup160	ECOD (v295.2)
A	Med6	e3j9oA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Med6	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L	Intracellular growth locus protein B	-	-	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
A, C, E, G, I A, C, E, G, I, K	Intracellular growth locus protein A	-	-	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L	IPR010269	Type VI secretion system TssC-like	Family
B, D, F, H, J B, D, F, H, J, L	IPR044032	TssC1, C-terminal	Domain
B, D, F, H, J B, D, F, H, J, L	IPR044031	TssC1, N-terminal	Domain
A, C, E, G, I A, C, E, G, I, K	IPR008312	Type VI secretion system sheath protein TssB1	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3J9O | pdb_00003j9o

CryoEM structure of a type VI secretion system

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage