3J9K

Structure of Dark apoptosome in complex with Dronc CARD domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth a]	EUF07891	e3j9ka4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
AA [auth a]	EUF07938	e3j9ka3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
AA [auth a]	EUF07950	e3j9ka5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
AA [auth a]	KOG4658_like_1	e3j9ka2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
AA [auth a]	NB-ARC_1st	e3j9ka1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
C	EUF07891	e3j9kC4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
C	EUF07938	e3j9kC3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
C	EUF07950	e3j9kC6	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
C	KOG4658_like_1	e3j9kC2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
C	NB-ARC_1st	e3j9kC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
CA [auth c]	EUF07891	e3j9kc4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
CA [auth c]	EUF07938	e3j9kc3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
CA [auth c]	EUF07950	e3j9kc5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
CA [auth c]	KOG4658_like_1	e3j9kc2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
CA [auth c]	NB-ARC_1st	e3j9kc1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
E	EUF07891	e3j9kE4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
E	EUF07938	e3j9kE3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
E	EUF07950	e3j9kE5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
E	KOG4658_like_1	e3j9kE2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
E	NB-ARC_1st	e3j9kE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
EA [auth e]	EUF07891	e3j9ke4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
EA [auth e]	EUF07938	e3j9ke3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
EA [auth e]	EUF07950	e3j9ke5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
EA [auth e]	KOG4658_like_1	e3j9ke2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
EA [auth e]	NB-ARC_1st	e3j9ke1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
G	EUF07891	e3j9kG4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
G	EUF07938	e3j9kG3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
G	EUF07950	e3j9kG5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
G	KOG4658_like_1	e3j9kG2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
G	NB-ARC_1st	e3j9kG1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
I	EUF07891	e3j9kI4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
I	EUF07938	e3j9kI3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
I	EUF07950	e3j9kI5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
I	KOG4658_like_1	e3j9kI2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
I	NB-ARC_1st	e3j9kI1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
K	EUF07891	e3j9kK4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
K	EUF07938	e3j9kK3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
K	EUF07950	e3j9kK5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
K	KOG4658_like_1	e3j9kK2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
K	NB-ARC_1st	e3j9kK1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
M	EUF07891	e3j9kM4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
M	EUF07938	e3j9kM3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
M	EUF07950	e3j9kM5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
M	KOG4658_like_1	e3j9kM2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
M	NB-ARC_1st	e3j9kM1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
O	EUF07891	e3j9kO4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
O	EUF07938	e3j9kO3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
O	EUF07950	e3j9kO5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
O	KOG4658_like_1	e3j9kO2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
O	NB-ARC_1st	e3j9kO1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
Q	EUF07891	e3j9kQ4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
Q	EUF07938	e3j9kQ3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
Q	EUF07950	e3j9kQ5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
Q	KOG4658_like_1	e3j9kQ2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
Q	NB-ARC_1st	e3j9kQ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
S	EUF07891	e3j9kS4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
S	EUF07938	e3j9kS3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
S	EUF07950	e3j9kS5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
S	KOG4658_like_1	e3j9kS2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
S	NB-ARC_1st	e3j9kS1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
U	EUF07891	e3j9kU4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
U	EUF07938	e3j9kU3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
U	EUF07950	e3j9kU5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
U	KOG4658_like_1	e3j9kU2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
U	NB-ARC_1st	e3j9kU1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
W	EUF07891	e3j9kW4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
W	EUF07938	e3j9kW3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
W	EUF07950	e3j9kW5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
W	KOG4658_like_1	e3j9kW2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
W	NB-ARC_1st	e3j9kW1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
Y	EUF07891	e3j9kY4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07891	ECOD (1.6)
Y	EUF07938	e3j9kY3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: EUF07938	ECOD (1.6)
Y	EUF07950	e3j9kY5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07950	ECOD (1.6)
Y	KOG4658_like_1	e3j9kY2	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: KOG4658_like_1	ECOD (1.6)
Y	NB-ARC_1st	e3j9kY1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
B	CARD	e3j9kB1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
BA [auth b]	CARD	e3j9kb1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
D	CARD	e3j9kD1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
DA [auth d]	CARD	e3j9kd1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
F	CARD	e3j9kF1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
FA [auth f]	CARD	e3j9kf1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
H	CARD	e3j9kH1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
J	CARD	e3j9kJ1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
L	CARD	e3j9kL1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
N	CARD	e3j9kN1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
P	CARD	e3j9kP1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
R	CARD	e3j9kR1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
T	CARD	e3j9kT1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
V	CARD	e3j9kV1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
X	CARD	e3j9kX1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
Z	CARD	e3j9kZ1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	PF00931	NB-ARC domain (NB-ARC)	NB-ARC domain	-	Domain
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	PF22164	Dark, winged-helix domain (Dark_WHD)	Dark, winged-helix domain	This entry represents a WH-like present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis [1,2].	Domain
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	PF17908	APAF-1 helical domain (APAF1_C)	APAF-1 helical domain	This domain represents the C-terminal alpha helical domain of the apoptotic Apaf-1 protein.	Domain
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	PF22080	Dark, CARD domain (Dark_CARD)	Dark, CARD domain	This entry represents a caspase recruitment domain (CARD) present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis ...	This entry represents a caspase recruitment domain (CARD) present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis [1]. This N-terminal CARD in Dark belongs to the alpha-helical Death Domain superfamily and interacts with the N-terminal CARD of Dronc protein [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	Apaf-1 related killer DARK	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity cysteine-type endopeptidase activator activity involved in apoptotic process molecular function regulator activity cysteine-type endopeptidase regulator activity involved in apoptotic process peptidase activator activity peptidase activator activity involved in apoptotic process CARD domain binding protein binding protein domain specific binding identical protein binding	compound eye retinal cell programmed cell death multicellular organismal process regulation of cellular process positive regulation of compound eye retinal cell programmed cell death cellular developmental process regulation of developmental process sensory organ development positive regulation of biological process visual system development cell development regulation of programmed cell death positive regulation of developmental process eye morphogenesis multicellular organism development compound eye morphogenesis compound eye retinal cell programmed cell death multicellular organismal process regulation of cellular process positive regulation of compound eye retinal cell programmed cell death cellular developmental process regulation of developmental process sensory organ development positive regulation of biological process visual system development cell development regulation of programmed cell death positive regulation of developmental process eye morphogenesis multicellular organism development compound eye morphogenesis cell differentiation regulation of retinal cell programmed cell death anatomical structure development animal organ morphogenesis sensory system development positive regulation of cellular process system development developmental process regulation of biological process positive regulation of programmed cell death eye development biological regulation animal organ development cell death positive regulation of retinal cell programmed cell death programmed cell death involved in cell development anatomical structure morphogenesis regulation of compound eye retinal cell programmed cell death compound eye development sensory organ morphogenesis retinal cell programmed cell death cellular process programmed cell death S-adenosylmethionine cycle S-adenosylmethionine metabolic process cellular metabolic process sulfur compound metabolic process metabolic process spermatid development spermatid differentiation sexual reproduction spermatogenesis reproductive process cellularization cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation multicellular organismal reproductive process sperm individualization male gamete generation anatomical structure formation involved in morphogenesis germ cell development chemical homeostasis homeostatic process triglyceride homeostasis acylglycerol homeostasis lipid homeostasis regulation of apoptotic process positive regulation of apoptotic process apoptotic process catabolic process oxoacid metabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process cellular catabolic process non-proteinogenic amino acid metabolic process sarcosine catabolic process carboxylic acid catabolic process small molecule metabolic process amino acid catabolic process non-proteinogenic amino acid catabolic process carboxylic acid metabolic process sarcosine metabolic process primary metabolic process cellular modified amino acid metabolic process alpha-amino acid catabolic process small molecule catabolic process cellular modified amino acid catabolic process cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cellular component organization or biogenesis plasma membrane bounded cell projection organization dendrite morphogenesis nervous system development cell morphogenesis involved in neuron differentiation generation of neurons neuron development pigment metabolic process melanization defense response biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response organic hydroxy compound metabolic process defense response to symbiont response to external stimulus response to biotic stimulus melanin metabolic process secondary metabolic process immune system process defense response to other organism response to stress phenol-containing compound metabolic process innate immune response response to external biotic stimulus central nervous system formation central nervous system development central nervous system morphogenesis autophagic cell death regulation of glial cell apoptotic process positive regulation of glial cell apoptotic process glial cell apoptotic process chaeta development response to ionizing radiation response to radiation response to abiotic stimulus response to gamma radiation regulation of humoral immune response humoral immune response negative regulation of response to stimulus negative regulation of immune response negative regulation of humoral immune response negative regulation of biological process regulation of response to stimulus negative regulation of immune system process regulation of immune response regulation of immune system process cellular homeostasis neuron cellular homeostasis response to nutrient levels response to starvation salivary gland histolysis gland development salivary gland development instar larval or pupal development metamorphosis anatomical structure regression gland morphogenesis instar larval or pupal morphogenesis salivary gland morphogenesis post-embryonic animal morphogenesis post-embryonic development exocrine system development	protein-containing complex intracellular anatomical structure apoptosome cytoplasm cellular anatomical entity cytosol
B, BA [auth b], D, DA [auth d], F, B, BA [auth b], D, DA [auth d], F, FA [auth f], H, J, L, N, P, R, T, V, X, Z	Caspase Nc	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cysteine-type endopeptidase activity involved in apoptotic signaling pathway cysteine-type endopeptidase activity involved in apoptotic process cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cysteine-type endopeptidase activity involved in apoptotic signaling pathway cysteine-type endopeptidase activity involved in apoptotic process CARD domain binding protein domain specific binding	developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching anatomical structure development embryo development embryonic development via the syncytial blastoderm metamorphosis compound eye retinal cell programmed cell death regulation of cellular process positive regulation of compound eye retinal cell programmed cell death cellular developmental process regulation of developmental process sensory organ development developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching anatomical structure development embryo development embryonic development via the syncytial blastoderm metamorphosis compound eye retinal cell programmed cell death regulation of cellular process positive regulation of compound eye retinal cell programmed cell death cellular developmental process regulation of developmental process sensory organ development positive regulation of biological process visual system development cell development regulation of programmed cell death positive regulation of developmental process eye morphogenesis compound eye morphogenesis cell differentiation regulation of retinal cell programmed cell death animal organ morphogenesis sensory system development positive regulation of cellular process system development regulation of biological process positive regulation of programmed cell death eye development biological regulation animal organ development cell death positive regulation of retinal cell programmed cell death programmed cell death involved in cell development anatomical structure morphogenesis regulation of compound eye retinal cell programmed cell death compound eye development sensory organ morphogenesis retinal cell programmed cell death cellular process programmed cell death cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process protein metabolic process macromolecule metabolic process central nervous system development nervous system development spermatid development spermatid differentiation sexual reproduction spermatogenesis reproductive process cellularization cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation multicellular organismal reproductive process sperm individualization male gamete generation anatomical structure formation involved in morphogenesis germ cell development developmental maturation generation of neurons neurogenesis neuron differentiation neuron remodeling anatomical structure maturation neuron development neuron maturation cell maturation apoptotic process regulation of apoptotic process positive regulation of apoptotic process hemocyte differentiation hemopoiesis immune system process hemocyte development cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization cell projection morphogenesis neuron projection morphogenesis dendrite development cellular component organization or biogenesis plasma membrane bounded cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation pigment metabolic process melanization defense response biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response organic hydroxy compound metabolic process defense response to symbiont response to external stimulus response to biotic stimulus melanin metabolic process secondary metabolic process defense response to other organism response to stress phenol-containing compound metabolic process innate immune response response to external biotic stimulus determination of adult lifespan negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation negative regulation of cellular process negative regulation of biological process programmed necrotic cell death head involution embryonic morphogenesis ectopic germ cell programmed cell death chaeta development oogenesis female gamete generation apoptotic process involved in development nurse cell apoptotic process catabolic process autophagy regulation of cellular metabolic process regulation of catabolic process regulation of autophagy cellular catabolic process regulation of cellular catabolic process regulation of metabolic process process utilizing autophagic mechanism zymogen activation salivary gland histolysis gland development salivary gland development instar larval or pupal development anatomical structure regression gland morphogenesis instar larval or pupal morphogenesis salivary gland morphogenesis post-embryonic animal morphogenesis post-embryonic development exocrine system development	cell periphery plasma membrane membrane cellular anatomical entity intracellular anatomical structure cytoplasm protein-containing complex apoptosome cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	IPR041452	APAF-1 helical domain	Domain
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	IPR002182	NB-ARC	Domain
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, AA [auth a], C, CA [auth c], E, A, AA [auth a], C, CA [auth c], E, EA [auth e], G, I, K, M, O, Q, S, U, W, Y	IPR001680	WD40 repeat	Repeat
B, BA [auth b], D, DA [auth d], F, B, BA [auth b], D, DA [auth d], F, FA [auth f], H, J, L, N, P, R, T, V, X, Z	IPR001309	Peptidase C14, p20 domain	Domain
B, BA [auth b], D, DA [auth d], F, B, BA [auth b], D, DA [auth d], F, FA [auth f], H, J, L, N, P, R, T, V, X, Z	IPR011600	Peptidase C14, caspase domain	Domain
B, BA [auth b], D, DA [auth d], F, B, BA [auth b], D, DA [auth d], F, FA [auth f], H, J, L, N, P, R, T, V, X, Z	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
B, BA [auth b], D, DA [auth d], F, B, BA [auth b], D, DA [auth d], F, FA [auth f], H, J, L, N, P, R, T, V, X, Z	IPR011029	Death-like domain superfamily	Homologous Superfamily
B, BA [auth b], D, DA [auth d], F, B, BA [auth b], D, DA [auth d], F, FA [auth f], H, J, L, N, P, R, T, V, X, Z	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
B, BA [auth b], D, DA [auth d], F, B, BA [auth b], D, DA [auth d], F, FA [auth f], H, J, L, N, P, R, T, V, X, Z	IPR033139	Peptidase family C14A, cysteine active site	Active Site
B, BA [auth b], D, DA [auth d], F, B, BA [auth b], D, DA [auth d], F, FA [auth f], H, J, L, N, P, R, T, V, X, Z	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain

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3J9K

Structure of Dark apoptosome in complex with Dronc CARD domain

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage