Structure of the translating mammalian ribosome-Sec61 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| EC [auth Sg] | SCOP2 Family | WD40-repeat | 8098887 | 4002744 | SCOP2 (2022-06-29) |
| EC [auth Sg] | SCOP2 Superfamily | WD40 repeat-like | 8098888 | 3001694 | SCOP2 (2022-06-29) |
| BC [auth Sd] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052596 | 3000068 | SCOP2B (2022-06-29) |
| AC [auth Sc] | SCOP2 Family | Cold shock DNA-binding domain-like | 8099837 | 4001909 | SCOP2 (2022-06-29) |
| AC [auth Sc] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8099838 | 3000135 | SCOP2 (2022-06-29) |
| YB [auth Sa] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053144 | 3000068 | SCOP2B (2022-06-29) |
| TB [auth SV] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053134 | 3000068 | SCOP2B (2022-06-29) |
| SB [auth SU] | SCOP2 Family | Ribosomal protein S10 | 8097027 | 4001240 | SCOP2 (2022-06-29) |
| SB [auth SU] | SCOP2 Superfamily | Ribosomal protein S10 | 8097028 | 3001336 | SCOP2 (2022-06-29) |
| RB [auth ST] | SCOP2 Family | Rps19E-like | 8096877 | 4000222 | SCOP2 (2022-06-29) |
| RB [auth ST] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8096878 | 3000034 | SCOP2 (2022-06-29) |
| G [auth D] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8049682 | 4006591 | SCOP2 (2022-06-29) |
| G [auth D] | SCOP2 Superfamily | Translational machinery components | 8052879 | 3000571 | SCOP2 (2022-06-29) |
| QB [auth SS] | SCOP2 Family | Ribosomal protein S13 | 8101556 | 4000260 | SCOP2 (2022-06-29) |
| QB [auth SS] | SCOP2 Superfamily | S13-like H2TH domain | 8101557 | 3000053 | SCOP2 (2022-06-29) |
| OB [auth SQ] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8099258 | 3000100 | SCOP2B (2022-06-29) |
| KB [auth SM] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8094792 | 4001513 | SCOP2 (2022-06-29) |
| KB [auth SM] | SCOP2 Superfamily | L30e-like | 8094793 | 3001739 | SCOP2 (2022-06-29) |
| DB [auth SF] | SCOP2B Superfamily | Ribosomal protein S7 | 8066005 | 3000799 | SCOP2B (2022-06-29) |
| CB [auth SE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052775 | 3000334 | SCOP2B (2022-06-29) |
| CB [auth SE] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052773 | 3001473 | SCOP2B (2022-06-29) |
| CB [auth SE] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052774 | 3000135 | SCOP2B (2022-06-29) |
| ZA [auth SB] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053206 | 3002166 | SCOP2B (2022-06-29) |
| YA [auth SA] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8052794 | 3001397 | SCOP2B (2022-06-29) |
| UA [auth 1] | SCOP2 Family | SecY-like | 8096883 | 4001751 | SCOP2 (2022-06-29) |
| UA [auth 1] | SCOP2 Superfamily | SecY-like | 8096884 | 3000333 | SCOP2 (2022-06-29) |
| OA [auth m] | SCOP2 Family | Ribosomal protein L40e | 8101562 | 4002847 | SCOP2 (2022-06-29) |
| OA [auth m] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8101563 | 3001320 | SCOP2 (2022-06-29) |
| NA [auth l] | SCOP2B Superfamily | Ribosomal protein L39e | 8098012 | 3001756 | SCOP2B (2022-06-29) |
| MA [auth k] | SCOP2 Family | Ribosomal L38e protein-like | 8049535 | 4006532 | SCOP2 (2022-06-29) |
| MA [auth k] | SCOP2 Superfamily | Ribosomal L38e protein-like | 8053571 | 3002206 | SCOP2 (2022-06-29) |
| IA [auth g] | SCOP2 Family | Ribosomal protein L34e-like | 8048727 | 4006193 | SCOP2 (2022-06-29) |
| IA [auth g] | SCOP2 Superfamily | Ribosomal protein L34e-like | 8053544 | 3002203 | SCOP2 (2022-06-29) |
| GA [auth e] | SCOP2B Superfamily | Ribosomal protein L32e | 8102190 | 3000982 | SCOP2B (2022-06-29) |
| EA [auth c] | SCOP2B Superfamily | L30e-like | 8096886 | 3001739 | SCOP2B (2022-06-29) |
| DA [auth b] | SCOP2 Family | Ribosomal protein L29e | 8049523 | 4006531 | SCOP2 (2022-06-29) |
| DA [auth b] | SCOP2 Superfamily | Ribosomal protein L29e | 8053041 | 3002157 | SCOP2 (2022-06-29) |
| CA [auth a] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8096880 | 3001045 | SCOP2B (2022-06-29) |
| BA [auth Z] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053051 | 3000334 | SCOP2B (2022-06-29) |
| AA [auth Y] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096888 | 3000334 | SCOP2B (2022-06-29) |
| X [auth V] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8098864 | 3000433 | SCOP2B (2022-06-29) |
| W [auth U] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053061 | 3002158 | SCOP2B (2022-06-29) |
| R [auth P] | SCOP2 Family | Ribosomal protein L22 | 8096623 | 4001212 | SCOP2 (2022-06-29) |
| R [auth P] | SCOP2 Superfamily | Ribosomal protein L22 | 8096624 | 3001078 | SCOP2 (2022-06-29) |
| P [auth N] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8096618 | 3000210 | SCOP2B (2022-06-29) |
| N [auth L] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8096882 | 3002162 | SCOP2B (2022-06-29) |
| M [auth J] | SCOP2B Superfamily | RL5-like | 8073896 | 3001709 | SCOP2B (2022-06-29) |
| L [auth I] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8099256 | 3000884 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth F] | Rhv | e3j7rF1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| EC [auth Sg] | Rhv | e3j7rSg1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| DC [auth Sf] | Rhv | e3j7rSf1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| CC [auth Se] | KAsynt_C_assoc | e3j7rSe1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| BC [auth Sd] | Rhv | e3j7rSd1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| H [auth E] | Rhv | e3j7rE1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| AC [auth Sc] | Rhv | e3j7rSc1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| ZB [auth Sb] | Rhv | e3j7rSb1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| YB [auth Sa] | Rhv | e3j7rSa1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| XB [auth SZ] | Rhv | e3j7rSZ1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| WB [auth SY] | Rhv | e3j7rSY1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| VB [auth SX] | Rhv | e3j7rSX1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| UB [auth SW] | Rhv | e3j7rSW1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| TB [auth SV] | Rhv | e3j7rSV1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| SB [auth SU] | Rhv | e3j7rSU1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| RB [auth ST] | Rhv | e3j7rST1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| G [auth D] | Rhv | e3j7rD1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| QB [auth SS] | FlaF_Ig-like | e3j7rSS1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v295) |
| PB [auth SR] | Rhv | e3j7rSR1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| OB [auth SQ] | Cellulase | e3j7rSQ1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| NB [auth SP] | Ribosomal_S17,Ribosomal_S17_N | e3j7rSP1 | A: alpha arrays | X: OB-fold | H: Nucleic acid-binding protein | T: Nucleic acid-binding protein | F: Ribosomal_S17,Ribosomal_S17_N | ECOD (v295) |
| MB [auth SO] | Rhv | e3j7rSO1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| LB [auth SN] | Rhv | e3j7rSN1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| KB [auth SM] | Rhv | e3j7rSM1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| JB [auth SL] | Ribosomal_S17,Ribosomal_S17_N | e3j7rSL1 | A: alpha arrays | X: OB-fold | H: Nucleic acid-binding protein | T: Nucleic acid-binding protein | F: Ribosomal_S17,Ribosomal_S17_N | ECOD (v295) |
| IB [auth SK] | Rhv | e3j7rSK1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| HB [auth SJ] | FlaF_Ig-like | e3j7rSJ1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v295) |
| F [auth C] | EryCIII-like_N | e3j7rC1 | A: alpha arrays | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: EryCIII-like_N | ECOD (v295) |
| GB [auth SI] | Rhv | e3j7rSI1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| FB [auth SH] | Rhv | e3j7rSH1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| EB [auth SG] | Rhv | e3j7rSG1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| DB [auth SF] | Rhv | e3j7rSF1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| CB [auth SE] | Rhv | e3j7rSE1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| BB [auth SD] | Rhv | e3j7rSD1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| AB [auth SC] | Toxin_R_bind_N | e3j7rSC2 | A: alpha arrays | X: jelly-roll | H: Acetamidase/Formamidase-like | T: Acetamidase/Formamidase-like | F: Toxin_R_bind_N | ECOD (v295) |
| AB [auth SC] | Viral_coat | e3j7rSC3 | A: alpha arrays | X: Trefoil/Plexin domain-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Viral_coat | ECOD (v295) |
| ZA [auth SB] | Rhv | e3j7rSB1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| YA [auth SA] | FlaF_Ig-like | e3j7rSA1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v295) |
| E [auth B] | Rhv | e3j7rB1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| VA [auth 2] | Rhv | e3j7r21 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| UA [auth 1] | Rhv | e3j7r11 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| TA [auth z] | Rhv | e3j7rz1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| SA [auth r] | Mtrc-MtrF_II-IV_dom | e3j7rr1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: Mtrc-MtrF_II-IV_dom | ECOD (v295) |
| RA [auth p] | Rhv | e3j7rp1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| QA [auth o] | Rhv | e3j7ro1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| OA [auth m] | Rhv | e3j7rm1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| NA [auth l] | Rhv | e3j7rl1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| D [auth A] | Rhv | e3j7rA1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| MA [auth k] | V_ATPase_I | e3j7rk1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| LA [auth j] | Rhv | e3j7rj1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| KA [auth i] | KAsynt_C_assoc | e3j7ri1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| JA [auth h] | Rhv | e3j7rh1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| IA [auth g] | V_ATPase_I | e3j7rg1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| HA [auth f] | Rhv | e3j7rf1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| GA [auth e] | Rhv | e3j7re1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| FA [auth d] | Rhv | e3j7rd1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| EA [auth c] | Rhv | e3j7rc1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| DA [auth b] | V_ATPase_I | e3j7rb1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| CA [auth a] | Fic | e3j7ra1 | A: alpha arrays | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: Fic | ECOD (v295) |
| BA [auth Z] | Rhv | e3j7rZ1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| AA [auth Y] | Rhv | e3j7rY1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| Z [auth X] | Rhv | e3j7rX1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| Y [auth W] | Rhv | e3j7rW1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| X [auth V] | Rhv | e3j7rV1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| W [auth U] | KAsynt_C_assoc | e3j7rU1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| V [auth T] | Rhv | e3j7rT1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| U [auth S] | Rhv | e3j7rS1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| T [auth R] | Ribosomal_L19e_C | e3j7rR1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) C-terminal domain | H: Ribosomal protein L19 (L19e) C-terminal domain | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (v295) |
| S [auth Q] | Rhv | e3j7rQ1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| R [auth P] | Rhv | e3j7rP1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| Q [auth O] | Rhv | e3j7rO1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| P [auth N] | Rhv | e3j7rN1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| O [auth M] | Rhv | e3j7rM1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| N [auth L] | V_ATPase_I | e3j7rL1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| M [auth J] | Rhv | e3j7rJ1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| L [auth I] | Rhv | e3j7rI1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| K [auth H] | Rhv | e3j7rH1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| J [auth G] | Rhv | e3j7rG1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth E] | PF03868 | Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N) | Ribosomal protein L6, N-terminal domain | Domain | |
| H [auth E] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| WB [auth SY] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| VB [auth SX] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| TB [auth SV] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| SB [auth SU] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| G [auth D] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| G [auth D] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| G [auth D] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| QB [auth SS] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| PB [auth SR] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
| OB [auth SQ] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| NB [auth SP] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| LB [auth SN] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| KB [auth SM] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| F [auth C] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| F [auth C] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| FB [auth SH] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| EB [auth SG] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| DB [auth SF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| CB [auth SE] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| CB [auth SE] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| CB [auth SE] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| CB [auth SE] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| BB [auth SD] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| BB [auth SD] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| BB [auth SD] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| AB [auth SC] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| AB [auth SC] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| ZA [auth SB] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| YA [auth SA] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| YA [auth SA] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
| E [auth B] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| BA [auth Z] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. | Domain |
| BA [auth Z] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| Y [auth W] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| X [auth V] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| U [auth S] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| R [auth P] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| Q [auth O] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| P [auth N] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| O [auth M] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| O [auth M] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| N [auth L] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| M [auth J] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| M [auth J] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| L [auth I] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| K [auth H] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| K [auth H] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | General secretory pathway (Sec) | Protein translocase |














