Structure of the 80S mammalian ribosome bound to eEF2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| BA [auth Y] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8097950 | 3000334 | SCOP2B (2022-06-29) |
| HA [auth e] | SCOP2 Family | Ribosomal protein L32e | 8102189 | 4003517 | SCOP2 (2022-06-29) |
| HA [auth e] | SCOP2 Superfamily | Ribosomal protein L32e | 8102190 | 3000982 | SCOP2 (2022-06-29) |
| HB [auth SK] | SCOP2 Family | eS10-like | 8051615 | 4007434 | SCOP2 (2022-06-29) |
| HB [auth SK] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8055718 | 3000034 | SCOP2 (2022-06-29) |
| NB [auth SQ] | SCOP2 Family | Translational machinery components | 8099257 | 4000951 | SCOP2 (2022-06-29) |
| NB [auth SQ] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8099258 | 3000100 | SCOP2 (2022-06-29) |
| PB [auth SS] | SCOP2B Superfamily | S13-like H2TH domain | 8101557 | 3000053 | SCOP2B (2022-06-29) |
| RB [auth SU] | SCOP2B Superfamily | Ribosomal protein S10 | 8097028 | 3001336 | SCOP2B (2022-06-29) |
| XB [auth Sa] | SCOP2 Family | Ribosomal protein S26e | 8048842 | 4006236 | SCOP2 (2022-06-29) |
| XB [auth Sa] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053144 | 3000068 | SCOP2 (2022-06-29) |
| DC [auth Sg] | SCOP2B Superfamily | WD40 repeat-like | 8098888 | 3001694 | SCOP2B (2022-06-29) |
| AC [auth Sd] | SCOP2 Family | Ribosomal protein S14p/S29e | 8047590 | 4003647 | SCOP2 (2022-06-29) |
| AC [auth Sd] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052596 | 3000068 | SCOP2 (2022-06-29) |
| ZB [auth Sc] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8099838 | 3000135 | SCOP2B (2022-06-29) |
| SB [auth SV] | SCOP2 Family | Ribosomal protein S21e | 8048781 | 4006215 | SCOP2 (2022-06-29) |
| SB [auth SV] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053134 | 3000068 | SCOP2 (2022-06-29) |
| IB [auth SL] | SCOP2 Family | Ribosomal S17 N-terminal domain-like | 8045087 | 4004290 | SCOP2 (2022-06-29) |
| IB [auth SL] | SCOP2 Family | Cold shock DNA-binding domain-like | 8052719 | 4001909 | SCOP2 (2022-06-29) |
| IB [auth SL] | SCOP2 Superfamily | Ribosomal S17 N-terminal domain-like | 8052718 | 3002138 | SCOP2 (2022-06-29) |
| IB [auth SL] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052720 | 3000135 | SCOP2 (2022-06-29) |
| FB [auth SI] | SCOP2 Family | Ribosomal protein S8e | 8048709 | 4006189 | SCOP2 (2022-06-29) |
| FB [auth SI] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8053082 | 3000433 | SCOP2 (2022-06-29) |
| CB [auth SF] | SCOP2 Family | Ribosomal protein S7 | 8066004 | 4001112 | SCOP2 (2022-06-29) |
| CB [auth SF] | SCOP2 Superfamily | Ribosomal protein S7 | 8066005 | 3000799 | SCOP2 (2022-06-29) |
| BB [auth SE] | SCOP2 Family | Ribosomal protein S4e, C-terminal KOW domain-like | 8044902 | 4004197 | SCOP2 (2022-06-29) |
| BB [auth SE] | SCOP2 Family | Cold shock DNA-binding domain-like | 8048395 | 4001909 | SCOP2 (2022-06-29) |
| BB [auth SE] | SCOP2 Family | Eukaryotic ribosomal protein S4e-like | 8050332 | 4006847 | SCOP2 (2022-06-29) |
| BB [auth SE] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052775 | 3000334 | SCOP2 (2022-06-29) |
| BB [auth SE] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052774 | 3000135 | SCOP2 (2022-06-29) |
| BB [auth SE] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8052773 | 3001473 | SCOP2 (2022-06-29) |
| YA [auth SB] | SCOP2 Family | Ribosomal S3Ae | 8048449 | 4006095 | SCOP2 (2022-06-29) |
| YA [auth SB] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8053206 | 3002166 | SCOP2 (2022-06-29) |
| XA [auth SA] | SCOP2 Family | Ribosomal protein S2-like | 8044911 | 4003744 | SCOP2 (2022-06-29) |
| XA [auth SA] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8052794 | 3001397 | SCOP2 (2022-06-29) |
| PA [auth m] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101563 | 3001320 | SCOP2B (2022-06-29) |
| OA [auth l] | SCOP2B Superfamily | Ribosomal protein L39e | 8098012 | 3001756 | SCOP2B (2022-06-29) |
| JA [auth g] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053544 | 3002203 | SCOP2B (2022-06-29) |
| EA [auth b] | SCOP2B Superfamily | Ribosomal protein L29e | 8053041 | 3002157 | SCOP2B (2022-06-29) |
| CA [auth Z] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053051 | 3000334 | SCOP2B (2022-06-29) |
| AA [auth X] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8097756 | 3000210 | SCOP2B (2022-06-29) |
| Y [auth V] | SCOP2 Family | Ribosomal protein L14 | 8098863 | 4001826 | SCOP2 (2022-06-29) |
| Y [auth V] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8098864 | 3000433 | SCOP2 (2022-06-29) |
| X [auth U] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053061 | 3002158 | SCOP2B (2022-06-29) |
| T [auth Q] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095983 | 3001045 | SCOP2B (2022-06-29) |
| O [auth L] | SCOP2 Family | Ribosomal protein L13e | 8048855 | 4006241 | SCOP2 (2022-06-29) |
| O [auth L] | SCOP2 Superfamily | Ribosomal protein L13e-like | 8053157 | 3002162 | SCOP2 (2022-06-29) |
| M [auth J] | SCOP2B Superfamily | RL5-like | 8073896 | 3001709 | SCOP2B (2022-06-29) |
| L [auth I] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8099256 | 3000884 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth A] | Rhv | e3j7pA1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| J [auth G] | Rhv | e3j7pG1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| Z [auth W] | Rhv | e3j7pW1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| BA [auth Y] | Rhv | e3j7pY1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| HA [auth e] | Rhv | e3j7pe1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| IA [auth f] | Rhv | e3j7pf1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| KA [auth h] | Rhv | e3j7ph1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| LA [auth i] | KAsynt_C_assoc | e3j7pi1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| MA [auth j] | Rhv | e3j7pj1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| QA [auth n] | Internalin_N | e3j7pn1 | A: alpha arrays | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Internalin_N | ECOD (v295) |
| HB [auth SK] | Rhv | e3j7pSK1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| KB [auth SN] | Rhv | e3j7pSN1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| NB [auth SQ] | Cellulase | e3j7pSQ1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| PB [auth SS] | FlaF_Ig-like | e3j7pSS1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v295) |
| RB [auth SU] | Rhv | e3j7pSU1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| TB [auth SW] | Rhv | e3j7pSW1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| VB [auth SY] | Rhv | e3j7pSY1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| WB [auth SZ] | Rhv | e3j7pSZ1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| XB [auth Sa] | Rhv | e3j7pSa1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| YB [auth Sb] | Rhv | e3j7pSb1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| I [auth F] | Rhv | e3j7pF1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| DC [auth Sg] | Rhv | e3j7pSg1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| CC [auth Sf] | Rhv | e3j7pSf1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| BC [auth Se] | KAsynt_C_assoc | e3j7pSe1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| H [auth E] | Rhv | e3j7pE1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| AC [auth Sd] | Rhv | e3j7pSd1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| ZB [auth Sc] | Rhv | e3j7pSc1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| UB [auth SX] | Rhv | e3j7pSX1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| SB [auth SV] | Rhv | e3j7pSV1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| G [auth D] | Rhv | e3j7pD1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| QB [auth ST] | Rhv | e3j7pST1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| OB [auth SR] | Rhv | e3j7pSR1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| MB [auth SP] | Ribosomal_S17,Ribosomal_S17_N | e3j7pSP1 | A: alpha arrays | X: OB-fold | H: Nucleic acid-binding protein | T: Nucleic acid-binding protein | F: Ribosomal_S17,Ribosomal_S17_N | ECOD (v295) |
| LB [auth SO] | Rhv | e3j7pSO1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| JB [auth SM] | Rhv | e3j7pSM1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| IB [auth SL] | Ribosomal_S17,Ribosomal_S17_N | e3j7pSL1 | A: alpha arrays | X: OB-fold | H: Nucleic acid-binding protein | T: Nucleic acid-binding protein | F: Ribosomal_S17,Ribosomal_S17_N | ECOD (v295) |
| F [auth C] | EryCIII-like_N | e3j7pC1 | A: alpha arrays | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: EryCIII-like_N | ECOD (v295) |
| GB [auth SJ] | FlaF_Ig-like | e3j7pSJ1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v295) |
| FB [auth SI] | Rhv | e3j7pSI1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| EB [auth SH] | Rhv | e3j7pSH1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| DB [auth SG] | Rhv | e3j7pSG1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| CB [auth SF] | Rhv | e3j7pSF1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| BB [auth SE] | Rhv | e3j7pSE1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| AB [auth SD] | Rhv | e3j7pSD1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| ZA [auth SC] | SBP_bac_1 | e3j7pSC2 | A: alpha arrays | X: amino-terminal domain of OmpATb | H: amino-terminal domain of OmpATb | T: amino-terminal domain of OmpATb | F: SBP_bac_1 | ECOD (v295) |
| ZA [auth SC] | Viral_coat | e3j7pSC3 | A: alpha arrays | X: Trefoil/Plexin domain-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Viral_coat | ECOD (v295) |
| YA [auth SB] | Rhv | e3j7pSB1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| XA [auth SA] | FlaF_Ig-like | e3j7pSA1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v295) |
| E [auth B] | Rhv | e3j7pB1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| VA [auth 4] | Rhv | e3j7p41 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| UA [auth r] | Mtrc-MtrF_II-IV_dom | e3j7pr1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: Mtrc-MtrF_II-IV_dom | ECOD (v295) |
| TA [auth q] | Rhv | e3j7pq2 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| TA [auth q] | KAsynt_C_assoc | e3j7pq3 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| SA [auth p] | Rhv | e3j7pp1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| RA [auth o] | Rhv | e3j7po1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| PA [auth m] | Rhv | e3j7pm1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| OA [auth l] | Rhv | e3j7pl1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| NA [auth k] | V_ATPase_I | e3j7pk1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| JA [auth g] | V_ATPase_I | e3j7pg1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| GA [auth d] | Rhv | e3j7pd1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| FA [auth c] | Rhv | e3j7pc1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| EA [auth b] | V_ATPase_I | e3j7pb1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| DA [auth a] | Fic | e3j7pa1 | A: alpha arrays | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: Fic | ECOD (v295) |
| CA [auth Z] | Rhv | e3j7pZ1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| AA [auth X] | Rhv | e3j7pX1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| Y [auth V] | Rhv | e3j7pV1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| X [auth U] | KAsynt_C_assoc | e3j7pU1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| W [auth T] | Rhv | e3j7pT1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| V [auth S] | Rhv | e3j7pS1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| U [auth R] | Ribosomal_L19e_C | e3j7pR1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) C-terminal domain | H: Ribosomal protein L19 (L19e) C-terminal domain | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (v295) |
| T [auth Q] | Rhv | e3j7pQ1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| S [auth P] | Rhv | e3j7pP1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| R [auth O] | Rhv | e3j7pO1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| Q [auth N] | Rhv | e3j7pN1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| P [auth M] | Rhv | e3j7pM1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| O [auth L] | V_ATPase_I | e3j7pL1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| N [auth K] | Rhv | e3j7pK1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| M [auth J] | Rhv | e3j7pJ1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| L [auth I] | Rhv | e3j7pI1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
| K [auth H] | Rhv | e3j7pH1 | A: alpha arrays | X: Spectrin repeat-like | H: Ribosomal protein S20 | T: Ribosomal protein S20 | F: Rhv | ECOD (v295) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| D [auth A] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| D [auth A] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| BA [auth Y] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| BA [auth Y] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| HB [auth SK] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| NB [auth SQ] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| PB [auth SS] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| RB [auth SU] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| UB [auth SX] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| SB [auth SV] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| G [auth D] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| G [auth D] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| G [auth D] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| QB [auth ST] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| OB [auth SR] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
| MB [auth SP] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| IB [auth SL] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| IB [auth SL] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| F [auth C] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| FB [auth SI] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| EB [auth SH] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| DB [auth SG] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| CB [auth SF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| CB [auth SF] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
| AB [auth SD] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| AB [auth SD] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| AB [auth SD] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| XA [auth SA] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| XA [auth SA] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
| E [auth B] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| CA [auth Z] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. | Domain |
| CA [auth Z] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| AA [auth X] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| Y [auth V] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| V [auth S] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| U [auth R] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| U [auth R] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| T [auth Q] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| T [auth Q] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
| T [auth Q] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| R [auth O] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| P [auth M] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| P [auth M] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| O [auth L] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| O [auth L] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| M [auth J] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| M [auth J] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| L [auth I] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| K [auth H] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| K [auth H] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |














