Annotations: 3J40

Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K [auth E]	Ribosomal_S30	e3j40E1	A: beta barrels	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: Ribosomal_S30	ECOD (v294.2)
J [auth C]	Ribosomal_S30	e3j40C1	A: beta barrels	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: Ribosomal_S30	ECOD (v294.2)
H [auth D]	Ribosomal_S30	e3j40D1	A: beta barrels	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: Ribosomal_S30	ECOD (v294.2)
G	Ribosomal_S30	e3j40G1	A: beta barrels	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: Ribosomal_S30	ECOD (v294.2)
F [auth B]	Ribosomal_S30	e3j40B1	A: beta barrels	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: Ribosomal_S30	ECOD (v294.2)
E [auth F]	Ribosomal_S30	e3j40F1	A: beta barrels	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: Ribosomal_S30	ECOD (v294.2)
C [auth A]	JAB	e3j40A1	A: beta barrels	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: JAB	ECOD (v294.2)
N [auth L]	VHP	e3j40L1	A: beta barrels	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.2)
M [auth J]	VHP	e3j40J1	A: beta barrels	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.2)
L [auth I]	VHP	e3j40I1	A: beta barrels	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.2)
I [auth K]	VHP	e3j40K1	A: beta barrels	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.2)
D [auth H]	VHP	e3j40H1	A: beta barrels	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.2)
B [auth M]	VHP	e3j40M1	A: beta barrels	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.2)
A [auth N]	Gp10-like	e3j40N1	A: beta barrels	X: Receptor activity-modifying protein (RAMP)	H: Receptor activity-modifying protein (RAMP)	T: Receptor activity-modifying protein (RAMP)	F: Gp10-like	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], E [auth F], F [auth B], G, H [auth D], C [auth A], E [auth F], F [auth B], G, H [auth D], J [auth C], K [auth E]	PF20911	Major capsid protein GP7 (GP7)	Major capsid protein GP7	-	Family
A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], M [auth J], N [auth L]	PF21628	Major coat protein-like (Gp10-like)	Major coat protein-like	This protein family includes Major coat protein from Salmonella phage epsilon15 (Gp10) and similar sequences from tailed bacteriophages and from bacterial prophages. Gp10 binds to the outer surface of the virus capsid. It adopts a jellyroll viral pro ...	This protein family includes Major coat protein from Salmonella phage epsilon15 (Gp10) and similar sequences from tailed bacteriophages and from bacterial prophages. Gp10 binds to the outer surface of the virus capsid. It adopts a jellyroll viral protein fold with two sheets consisting of four beta-strands each [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A], E [auth F], F [auth B], G, H [auth D], C [auth A], E [auth F], F [auth B], G, H [auth D], J [auth C], K [auth E]	gp7	-	-	viral capsid virion component
A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], M [auth J], N [auth L]	gp10	-	-	viral capsid virion component viral capsid, decoration

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], E [auth F], F [auth B], G, H [auth D], C [auth A], E [auth F], F [auth B], G, H [auth D], J [auth C], K [auth E]	IPR048813	Major capsid protein GP7-like	Family
A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], M [auth J], N [auth L]	IPR049302	Major coat protein-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3J40 | pdb_00003j40

Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage