Annotations: 3J1P

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Calici_coat	e3j1pA1	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat	ECOD (1.6)
A	EUF07536	e3j1pA3	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: EUF07536	ECOD (1.6)
A	Rhv_4	e3j1pA2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)
B	Calici_coat	e3j1pB2	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat	ECOD (1.6)
B	EUF07536	e3j1pB3	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: EUF07536	ECOD (1.6)
B	Rhv_4	e3j1pB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)
C	Calici_coat	e3j1pC3	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat	ECOD (1.6)
C	EUF07536	e3j1pC2	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: EUF07536	ECOD (1.6)
C	Rhv_4	e3j1pC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Major capsid protein VP60	5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity endopeptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides helicase activity RNA helicase activity ATP-dependent activity, acting on RNA ATP-dependent activity	cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process cellular process macromolecule metabolic process gene expression DNA-templated transcription organonitrogen compound metabolic process proteolysis protein metabolic process	membrane cellular anatomical entity viral capsid virion component intracellular anatomical structure cytoplasm host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR001205	RNA-directed RNA polymerase, C-terminal domain	Domain
A, B, C	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, C	IPR014759	Helicase, superfamily 3, single-stranded RNA virus	Domain
A, B, C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C	IPR000317	Peptidase C24, Calicivirus polyprotein Orf1	Domain
A, B, C	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, B, C	IPR004005	Calicivirus coat protein	Domain
A, B, C	IPR004004	Helicase/polymerase/peptidase polyprotein, Calicivirus-type	Family
A, B, C	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, C	IPR033703	Picornavirus/Calicivirus coat protein	Domain
A, B, C	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain
A, B, C	IPR049434	VPg	Domain
A, B, C	IPR000605	Helicase, superfamily 3, single-stranded DNA/RNA virus	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.