3J1O
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth H] | SCOP2B Superfamily | Mediator subcomplex-like | 8051777 | 3001613 | SCOP2B (2021-05-27) |
C [auth J] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 8 | 8091509 | 3002515 | SCOP2B (2021-05-27) |
F [auth M] | SCOP2B Superfamily | CYTH-like phosphatases | 8091513 | 3001426 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | PF10280 | e3j1oH1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 11 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 11 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 11 | F: PF10280 | ECOD (1.6) |
B [auth I] | PF10156 | e3j1oI1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 17 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 17 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 17 | F: PF10156 | ECOD (1.6) |
C [auth J] | PF10232 | e3j1oJ2 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 8 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 8 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 8 | F: PF10232 | ECOD (1.6) |
D [auth K] | PF06179 | e3j1oK1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 22 | F: PF06179 | ECOD (1.6) |
E [auth L] | PF09637 | e3j1oL1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: PF09637 | ECOD (1.6) |
F [auth M] | PF08612 | e3j1oM1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: PF08612 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth H] | PF10280 | Mediator complex protein (Med11) | Mediator complex protein | - | Family |
B [auth I] | PF10156 | Subunit 17 of Mediator complex (Med17) | Subunit 17 of Mediator complex | - | Family |
C [auth J] | PF10232 | Mediator of RNA polymerase II transcription complex subunit 8 (Med8) | Mediator of RNA polymerase II transcription complex subunit 8 | - | Family |
D [auth K] | PF06179 | Surfeit locus protein 5 subunit 22 of Mediator complex (Med22) | Surfeit locus protein 5 subunit 22 of Mediator complex | - | Family |
E [auth L] | PF09637 | Med18 protein (Med18) | Med18 protein | Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Me ... | Domain |