3J0P
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
N [auth B] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8098448 | 3001911 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
H [auth S] | Ribosomal_S19 | e3j0pS1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
I [auth L] | Ribosom_S12_S23 | e3j0pL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
J [auth X] | Ribosomal_S30 | e3j0pX1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: Ribosomal_S30 | ECOD (1.6) |
N [auth B] | Ribosomal_L1_2nd_1 | e3j0pB4 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
N [auth B] | Ribosomal_L1_1st_1 | e3j0pB3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
N [auth B] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
N [auth B] | IPR023673 | Large ribosomal subunit protein uL1, conserved site | Conserved Site |
N [auth B] | IPR050257 | Eukaryotic ribosomal RNA-processing and assembly protein | Family |
N [auth B] | IPR016095 | Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain | Homologous Superfamily |
N [auth B] | IPR023674 | Ribosomal protein uL1-like | Homologous Superfamily |
N [auth B] | IPR002143 | Large ribosomal subunit protein uL1 | Family |
N [auth B] | IPR028364 | Ribosomal protein uL1/ribosomal biogenesis protein | Family |