3IF6
Crystal structure of OXA-46 beta-lactamase from P. aeruginosa
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3if6a_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | beta-Lactamase/D-ala carboxypeptidase | automated matches | (Pseudomonas aeruginosa ) [TaxId: 287 ], | SCOPe (2.08) |
B | d3if6b_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | beta-Lactamase/D-ala carboxypeptidase | automated matches | (Pseudomonas aeruginosa ) [TaxId: 287 ], | SCOPe (2.08) |
C | d3if6c_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | beta-Lactamase/D-ala carboxypeptidase | automated matches | (Pseudomonas aeruginosa ) [TaxId: 287 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | beta-Lactamase/D-ala carboxypeptidase | 8074280 | 4002685 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | beta-lactamase/transpeptidase-like | 8074281 | 3001604 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8074281 | 3001604 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8074281 | 3001604 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Transpeptidase_1st | e3if6A1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_1st | ECOD (1.6) |
A | Transpeptidase_2nd_1 | e3if6A2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_2nd_1 | ECOD (1.6) |
B | Transpeptidase_1st | e3if6B2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_1st | ECOD (1.6) |
B | Transpeptidase_2nd_1 | e3if6B1 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_2nd_1 | ECOD (1.6) |
C | Transpeptidase_1st | e3if6C3 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_1st | ECOD (1.6) |
C | Transpeptidase_2nd_1 | e3if6C4 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_2nd_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
B | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
C | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) | |
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) | |
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) | |
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) | |
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) | |
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) | |
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) | |
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) | |
ARO:3001797 | OXA-46 | OXA-46 is a beta-lactamase found in Pseudomonas aeruginosa. | CARD (3.2.9) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) | |
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) | |
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) | |
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) | |
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) | |
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) | |
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) | |
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) | |
ARO:3007720 | OXA-46-like beta-lactamase | penam | antibiotic inactivation | CARD (3.2.9) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain | |
PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain | |
PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain | |
IPR002137 | Beta-lactamase, class-D active site | Active Site | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain | |
IPR002137 | Beta-lactamase, class-D active site | Active Site | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain | |
IPR002137 | Beta-lactamase, class-D active site | Active Site |