3ID5
Crystal structure of Sulfolobus solfataricus C/D RNP assembled with Nop5, fibrillarin, L7Ae and a split half C/D RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Fibrillarin homologue | 8063659 | 4000661 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063660 | 3000118 | SCOP2 (2021-05-27) |
F | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063660 | 3000118 | SCOP2B (2021-05-27) |
C | SCOP2 Family | L30e/L7ae ribosomal proteins | 8063949 | 4001513 | SCOP2 (2021-05-27) |
C | SCOP2 Superfamily | L30e-like | 8063950 | 3001739 | SCOP2 (2021-05-27) |
G | SCOP2B Superfamily | L30e-like | 8063950 | 3001739 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF01269 | e3id5B1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF01269 | ECOD (1.6) |
F | PF01269 | e3id5F1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF01269 | ECOD (1.6) |
E | PF01798 | e3id5E3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: PF01798 | ECOD (1.6) |
E | PF01798 | e3id5E2 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PF01798 | ECOD (1.6) |
E | PF21572 | e3id5E4 | A: mixed a+b and a/b | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PF21572 | ECOD (1.6) |
A | PF01798 | e3id5A3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: PF01798 | ECOD (1.6) |
A | PF01798 | e3id5A2 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PF01798 | ECOD (1.6) |
A | PF21572 | e3id5A4 | A: mixed a+b and a/b | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PF21572 | ECOD (1.6) |
C | PF01248 | e3id5C1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
G | PF01248 | e3id5G1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01269 | Fibrillarin (Fibrillarin) | Fibrillarin | - | Domain | |
PF21572 | Archaeal Nop5/56-rel, N-terminal domain (Nop5_56-rel_N_Arc) | Archaeal Nop5/56-rel, N-terminal domain | This domain is found at the N-terminal end of a group of archaeal proteins, including Uncharacterized NOP5 family protein MJ0694 from Methanocaldococcus jannaschii. This domain interacts with fibrillarin, the other subunit of a complex that is critic ... | Domain | |
PF01798 | snoRNA binding domain, fibrillarin (Nop) | snoRNA binding domain, fibrillarin | - | Family | |
PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000692 | rRNA 2'-O-methyltransferase fibrillarin-like | Family | |
IPR020813 | Fibrillarin, conserved site | Conserved Site | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR042239 | Nop, C-terminal domain | Homologous Superfamily | |
IPR036070 | Nop domain superfamily | Homologous Superfamily | |
IPR045056 | Nucleolar protein Nop56/Nop58 | Family | |
IPR002687 | Nop domain | Domain | |
IPR048896 | Nop5/56-related, N-terminal domain | Domain | |
IPR012976 | NOSIC | Domain | |
IPR047099 | Nop5, N-terminal domain superfamily | Homologous Superfamily | |
IPR004038 | Ribosomal protein eL8/eL30/eS12/Gadd45 | Domain | |
IPR022481 | Large ribosomal subunit protein eL8, archaea | Family | |
IPR004037 | Large ribosomal subunit protein eL8-like, conserved site | Conserved Site | |
IPR029064 | Ribosomal protein eL30-like superfamily | Homologous Superfamily | |
IPR018492 | Ribosomal protein eL8/Nhp2 family | Family |